RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NUCKS1Q9H1E3 243 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 THAP9Q9H5L6 903 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ECT2Q9H8V3 914 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 A0A096LPE4 126 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 A0A1W2PPZ6 126 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 FAM221AA4D161 298 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 FAM155AB1AL88 458 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ECE2O60344 883 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 DDNO94850 711 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PRPF6O94906 941 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 CD33P20138 364 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 SLC16A2P36021 539 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PPP2R5DQ14738 602 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PPP2R5BQ15173 497 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 CDKAL1Q5VV42 579 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 CST9Q5W186 159 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ENAHQ8N8S7 591 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 SLC17A8Q8NDX2 589 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC8CQ8TDW0 803 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 MKL1Q969V6 931 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 FAM84BQ96KN1 310 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ALG13Q9NP73 1137 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 GPR108Q9NPR9 543 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 TMOD4Q9NZQ9 345 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 TARSL2A2RTX5 802 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 TCP11X1B4DZS4 312 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 FAM107AO95990 144 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 GAS8O95995 478 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 F11P03951 625 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 MAPTP10636 758 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 CHN1P15882 459 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ITPKAP23677 461 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ADCY7P51828 1080 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ZYXQ15942 572 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PPP2R5EQ16537 467 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 WDR44Q5JSH3 913 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 RIPOR1Q6ZS17 1223 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 TRAPPC11Q7Z392 1133 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 KAT2BQ92831 832 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 STAMBPL1Q96FJ0 436 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ZFP42Q96MM3 310 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 RAB3IPQ96QF0 476 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF576Q9H609 170 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 A0A0G2JND7 137 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PSMD14O00487 310 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SERPING1P05155 500 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 CA4P22748 312 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 KLRC1P26715 233 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 CNGA1P29973 690 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PSMC4P43686 418 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PPP2R5CQ13362 524 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC36Q1X8D7 754 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SLC35G1Q2M3R5 365 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PLEKHG4Q58EX7 1191 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 STRIP1Q5VSL9 837 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 BSPRYQ5W0U4 402 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 WDR93Q6P2C0 686 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 TRIM46Q7Z4K8 759 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SLC44A5Q8NCS7 719 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 GLG1Q92896 1179 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 FERD3LQ96RJ6 166 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 HEMGNQ9BXL5 484 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 NOD2Q9HC29 1040 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC4CQ9HCJ2 640 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 RAB21Q9UL25 225 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF148Q9UQR1 794 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 LUC7L3O95232 432 aaKnown RBP5.84□□□□□ -1.47
LIMA1-203ENST00000547825 ANP32DO95626 131 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 ACTN1P12814 892 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 GCFC2P16383 781 aaKnown RBP5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PDE6CP51160 858 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 IRX4P78413 519 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 TCP10Q12799 353 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 KIF22Q14807 665 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 UBE2SQ16763 222 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC23Q53EV4 343 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-203ENST00000547825 WDR59Q6PJI9 974 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PODNQ7Z5L7 613 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 LDHDQ86WU2 507 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SPNS2Q8IVW8 549 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PAF1Q8N7H5 531 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 TNFRSF25Q93038 417 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 NXPE3Q969Y0 559 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 NUDCD1Q96RS6 583 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 EYA3Q99504 573 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 COA1Q9GZY4 146 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PCIF1Q9H4Z3 704 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 YY1AP1Q9H869 796 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 RRAGCQ9HB90 399 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 FGFR1OP2Q9NVK5 253 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 DONSONQ9NYP3 566 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SCOCQ9UIL1 159 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PCDHA4Q9UN74 947 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 AGTPBP1Q9UPW5 1226 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 DNAH12Q6ZR08 3092 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 GSG1L2A8MUP6 293 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PRPF3O43395 683 aaKnown RBP5.84□□□□□ -1.47
LIMA1-203ENST00000547825 BNIP3LO60238 219 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 SPAG7O75391 227 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 TROVE2P10155 538 aaKnown RBP eCLIP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms