RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SLC41A1Q8IVJ1 513 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 ASB10Q8WXI3 467 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 LINC00476Q8WZB0 136 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 TTC17Q96AE7 1141 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 CEP95Q96GE4 821 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 CDC5LQ99459 802 aaKnown RBP5.16□□□□□ -1.58
VPS29-202ENST00000447578 NEU1Q99519 415 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 RSAD1Q9HA92 442 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 DNAJC28Q9NX36 388 aa5.16□□□□□ -1.58
VPS29-202ENST00000447578 FANCD2Q9BXW9 1451 aa5.15□□□□□ -1.58
VPS29-202ENST00000447578 KDM1AO60341 852 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 CTNND1O60716 968 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 TMEM127O75204 238 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 ITGA10O75578 1167 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 LTA4HP09960 611 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 AKAP5P24588 427 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 DDX6P26196 483 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS29-202ENST00000447578 MANFP55145 182 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 MORC3Q14149 939 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 SAFBQ15424 915 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS29-202ENST00000447578 ZRSR2Q15696 482 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 CCDC178Q5BJE1 867 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 RRP12Q5JTH9 1297 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 C10orf62Q5T681 223 aaPredicted RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 METRNLQ641Q3 311 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 FBXO42Q6P3S6 717 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 DRICH1Q6PGQ1 229 aaPredicted RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 GLB1L2Q8IW92 636 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 SLC35G2Q8TBE7 412 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 TFAP2CQ92754 450 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 TEKT5Q96M29 485 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 ACAP3Q96P50 834 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 SLC12A5Q9H2X9 1139 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 NMRK2Q9NPI5 230 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 DDX20Q9UHI6 824 aaKnown RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 CLCA2Q9UQC9 943 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 FAM50BQ9Y247 325 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 USP15Q9Y4E8 981 aaPredicted RBP5.15□□□□□ -1.59
VPS29-202ENST00000447578 COX11Q9Y6N1 276 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 SPATA31A6Q5VVP1 1343 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 CARMIL1Q5VZK9 1371 aa5.15□□□□□ -1.59
VPS29-202ENST00000447578 ANO9A1A5B4 782 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 PIPSLA2A3N6 862 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 IFRD1O00458 451 aaPredicted RBP5.14□□□□□ -1.59
VPS29-202ENST00000447578 APAF1O14727 1248 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 OFD1O75665 1012 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 SPDEFO95238 335 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 HKR1P10072 659 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 PHKG2P15735 406 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 CD38P28907 300 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 AVPR1BP47901 424 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 KRTAP10-11P60412 298 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 RESTQ13127 1097 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 DHX8Q14562 1220 aaKnown RBP5.14□□□□□ -1.59
VPS29-202ENST00000447578 PRR16Q569H4 304 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 MFSD14BQ5SR56 506 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 FAM102AQ5T9C2 384 aaPredicted RBP5.14□□□□□ -1.59
VPS29-202ENST00000447578 MIER2Q8N344 545 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 SNX33Q8WV41 574 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 JADE3Q92613 823 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 PHACTR3Q96KR7 559 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 C1orf112Q9NSG2 853 aa5.14□□□□□ -1.59
VPS29-202ENST00000447578 CCM2LQ9NUG4 571 aaPredicted RBP5.14□□□□□ -1.59
VPS29-202ENST00000447578 ARHGAP35Q9NRY4 1499 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 B5MCH6 92 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 DIRC3C9JPN6 131 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 ZRANB2O95218 330 aaKnown RBP eCLIP5.13□□□□□ -1.591e-7■■■■□ 19.3
VPS29-202ENST00000447578 LPLP06858 475 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 BMT2Q1RMZ1 405 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 PITRM1Q5JRX3 1037 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 SIMC1Q8NDZ2 872 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 SLC35B2Q8TB61 432 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 RUNDC1Q96C34 613 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 COQ10AQ96MF6 247 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 ORAI2Q96SN7 254 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 GPRC5DQ9NZD1 345 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 EDARQ9UNE0 448 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 DAAM1Q9Y4D1 1078 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 PRDM2Q13029 1718 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 SALL3Q9BXA9 1300 aa5.13□□□□□ -1.59
VPS29-202ENST00000447578 ADCY6O43306 1168 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 EGR2P11161 476 aaPredicted RBP5.12□□□□□ -1.59
VPS29-202ENST00000447578 ENPP1P22413 925 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 CTSSP25774 331 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 MGAT1P26572 445 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 CXCR5P32302 372 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 CHN2P52757 468 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 LGALS4P56470 323 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 SRSF2Q01130 221 aaKnown RBP5.12□□□□□ -1.59
VPS29-202ENST00000447578 FSCN1Q16658 493 aaKnown RBP5.12□□□□□ -1.59
VPS29-202ENST00000447578 UGT8Q16880 541 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 C19orf54Q5BKX5 351 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 CT83Q5H943 113 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 TOR2AQ5JU69 321 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 PRAMEF14Q5SWL7 426 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 B3GNT9Q6UX72 402 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 OR14C36Q8NHC7 312 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 SSH1Q8WYL5 1049 aa5.12□□□□□ -1.59
VPS29-202ENST00000447578 EAF2Q96CJ1 260 aaPredicted RBP5.12□□□□□ -1.59
VPS29-202ENST00000447578 SLC2A13Q96QE2 648 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms