RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	GAS2L3	Q86XJ1	694 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	GSTCD	Q8NEC7	633 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	OR5B17	Q8NGF7	314 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	PLEKHO2	Q8TD55	490 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	C18orf25	Q96B23	403 aa	Predicted RBP	13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF689	Q96CS4	500 aa	Predicted RBP	13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	DDX27	Q96GQ7	796 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	RBSN	Q9H1K0	784 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	VPS16	Q9H269	839 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	HSD3B7	Q9H2F3	369 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	LIMA1	Q9UHB6	759 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	PLAGL2	Q9UPG8	496 aa		13.51	□□□□□ -0.25
ABCD4-223	ENST00000555904	RALGAPA2	Q2PPJ7	1873 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	CASTOR2	A6NHX0	329 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	P4HA2	O15460	535 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	LAG3	P18627	525 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	PNPLA4	P41247	253 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	OR1G1	P47890	313 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	COPB1	P53618	953 aa	Known RBP	13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	RBP5	P82980	135 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	PPP3CA	Q08209	521 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZBTB6	Q15916	424 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	TDRD10	Q5VZ19	366 aa	Known RBP	13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	SV2A	Q7L0J3	742 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	FBXL13	Q8NEE6	735 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF560	Q96MR9	790 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	TMEM175	Q9BSA9	504 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	CXCL16	Q9H2A7	254 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	RC3H2	Q9HBD1	1191 aa	Known RBP	13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	MSRA	Q9UJ68	235 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	RWDD3	Q9Y3V2	267 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904	PCDHA11	Q9Y5I1	949 aa		13.5	□□□□□ -0.25
ABCD4-223	ENST00000555904		A0A1W2PPC1	479 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	GOLGA6L3	A6NEY3	463 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	LGALS16	A8MUM7	142 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	PODXL	O00592	558 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	CBFA2T2	O43439	604 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	ALDH2	P05091	517 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	PAX3	P23760	479 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	LRPAP1	P30533	357 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	POLR2B	P30876	1174 aa	Known RBP	13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	MCCD1	P59942	119 aa	Predicted RBP	13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	FANCC	Q00597	558 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	UBXN1	Q04323	297 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	DSC1	Q08554	894 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	NCOA4	Q13772	614 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	NAB2	Q15742	525 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	RAB30	Q15771	203 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZACN	Q401N2	412 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	SV2C	Q496J9	727 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	CBWD6	Q4V339	395 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	WDR44	Q5JSH3	913 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	CBWD3	Q5JTY5	395 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	CBWD5	Q5RIA9	395 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	C1orf220	Q5T0J3	134 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF280B	Q86YH2	543 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	COLGALT2	Q8IYK4	626 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	LRRC52	Q8N7C0	313 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	C1orf127	Q8N9H9	656 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF516	Q92618	1163 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF558	Q96NG5	402 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	COLEC11	Q9BWP8	271 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	GOLGA2P5	Q9HBQ8	144 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	MIOS	Q9NXC5	875 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	GCNT4	Q9P109	453 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	AGAP1	Q9UPQ3	857 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	NUB1	Q9Y5A7	615 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	PCDHB12	Q9Y5F1	795 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	TTC3	P53804	2025 aa		13.49	□□□□□ -0.25
ABCD4-223	ENST00000555904	COL4A6	Q14031	1691 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	GTPBP10	A4D1E9	387 aa	Known RBP	13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	LRRC10B	A6NIK2	292 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	PMM2	O15305	246 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	TRAPPC3	O43617	180 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	B3GAT3	O94766	335 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	DDHD2	O94830	711 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	C4BPA	P04003	597 aa	Known RBP	13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	P4HA1	P13674	534 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	ATIC	P31939	592 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	PPM1A	P35813	382 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	CLCNKB	P51801	687 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	GUCY2F	P51841	1108 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	RABGGTB	P53611	331 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	BCAR1	P56945	870 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	UBASH3A	P57075	661 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	SOX4	Q06945	474 aa	Predicted RBP	13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	UPP1	Q16831	310 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	SGSM1	Q2NKQ1	1148 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	UVSSA	Q2YD98	709 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	ZNF699	Q32M78	642 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	MIIP	Q5JXC2	388 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	C9orf57	Q5W0N0	161 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	DCLRE1A	Q6PJP8	1040 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	GBP6	Q6ZN66	633 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	SP7	Q8TDD2	431 aa	Predicted RBP	13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	TAF4B	Q92750	862 aa		13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.48	□□□□□ -0.25
ABCD4-223	ENST00000555904	NRDE2	Q9H7Z3	1164 aa		13.48	□□□□□ -0.25

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