RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 LCHNA4D1U4 455 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 STX10O60499 249 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 ZC3H11AO75152 810 aaKnown RBP eCLIP12.54□□□□□ -0.4
YBX3-213ENST00000542641 TNNC2P02585 160 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 TRIM49P0CI25 452 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 TRIM49CP0CI26 452 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 MYOGP15173 224 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 CYP3A5P20815 502 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 CDK11BP21127 795 aaKnown RBP12.54□□□□□ -0.4
YBX3-213ENST00000542641 EEF1GP26641 437 aaKnown RBP12.54□□□□□ -0.4
YBX3-213ENST00000542641 AP3M2P53677 418 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 SOX4Q06945 474 aaPredicted RBP12.54□□□□□ -0.4
YBX3-213ENST00000542641 TUSC3Q13454 348 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 NAB2Q15742 525 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 TCP11X2Q5H9J9 407 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 C1orf220Q5T0J3 134 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 TRIM59Q8IWR1 403 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 EFCAB3Q8N7B9 438 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 RNF214Q8ND24 703 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 OR5B17Q8NGF7 314 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 ZNF516Q92618 1163 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 FAM84AQ96KN4 292 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 NRDE2Q9H7Z3 1164 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 MMRN2Q9H8L6 949 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 DPP3Q9NY33 737 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 HCSTQ9UBK5 93 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 TUBGCP4Q9UGJ1 667 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 MSRAQ9UJ68 235 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.54□□□□□ -0.4
YBX3-213ENST00000542641 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.54□□□□□ -0.4
YBX3-213ENST00000542641 MRPL42Q9Y6G3 142 aaKnown RBP12.54□□□□□ -0.4
YBX3-213ENST00000542641 PTPRJQ12913 1337 aa12.54□□□□□ -0.4
YBX3-213ENST00000542641 RANBP2P49792 3224 aaKnown RBP12.53□□□□□ -0.4
YBX3-213ENST00000542641 A0A1W2PPC1 479 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 CASTOR2A6NHX0 329 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 ALDH2P05091 517 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 GTF2H1P32780 548 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 PBX2P40425 430 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 OR1G1P47890 313 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 GCLMP48507 274 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 ALDH7A1P49419 539 aaKnown RBP12.53□□□□□ -0.4
YBX3-213ENST00000542641 GUCY2FP51841 1108 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 MCCD1P59942 119 aaPredicted RBP12.53□□□□□ -0.4
YBX3-213ENST00000542641 PPP3CAQ08209 521 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 DSC1Q08554 894 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 TRAPPC11Q7Z392 1133 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 COLGALT2Q8IYK4 626 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 ANKRD20A12PQ8NF67 263 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 SLC35C1Q96A29 364 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 TUBGCP2Q9BSJ2 902 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 PBX4Q9BYU1 374 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 MTMR12Q9C0I1 747 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 CWH43Q9H720 699 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 GOLGA2P5Q9HBQ8 144 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 DNAJB4Q9UDY4 337 aa12.53□□□□□ -0.4
YBX3-213ENST00000542641 R3HCC1Q9Y3T6 440 aaKnown RBP12.53□□□□□ -0.4
YBX3-213ENST00000542641 LAMA2P24043 3122 aaKnown RBP12.53□□□□□ -0.4
YBX3-213ENST00000542641 LINC01553A4QN01 128 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 B4GALT3O60512 393 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 PHACTR2O75167 634 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 C4BPAP04003 597 aaKnown RBP12.52□□□□□ -0.41
YBX3-213ENST00000542641 ITGB3P05106 788 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 CA3P07451 260 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 KRT19P08727 400 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 C7P10643 843 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 ATP1A3P13637 1013 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 PRKCSHP14314 528 aaPredicted RBP12.52□□□□□ -0.41
YBX3-213ENST00000542641 ZNF18P17022 549 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 RPL9P32969 192 aaKnown RBP12.52□□□□□ -0.41
YBX3-213ENST00000542641 CLCNKBP51801 687 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 BCAR1P56945 870 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 KCNH2Q12809 1159 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 BIRC3Q13489 604 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 RAB30Q15771 203 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 MAN2A1Q16706 1144 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 SV2AQ7L0J3 742 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 TMEM130Q8N3G9 435 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 C1orf127Q8N9H9 656 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 RABGGTAQ92696 567 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 DDX27Q96GQ7 796 aaKnown RBP12.52□□□□□ -0.41
YBX3-213ENST00000542641 UROC1Q96N76 676 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 TMEM175Q9BSA9 504 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 HSD3B7Q9H2F3 369 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 TMEM8AQ9HCN3 771 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 AAASQ9NRG9 546 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 CACNG4Q9UBN1 327 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 ITGA11Q9UKX5 1188 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 FAN1Q9Y2M0 1017 aa12.52□□□□□ -0.41
YBX3-213ENST00000542641 YBX2Q9Y2T7 364 aaKnown RBP12.52□□□□□ -0.41
YBX3-213ENST00000542641 PTPRSQ13332 1948 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 PES1O00541 588 aaKnown RBP12.51□□□□□ -0.41
YBX3-213ENST00000542641 PODXLO00592 558 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 NRP1O14786 923 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 AFPP02771 609 aaKnown RBP12.51□□□□□ -0.41
YBX3-213ENST00000542641 GALTP07902 379 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 TPM2P07951 284 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 LAG3P18627 525 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 LRPAP1P30533 357 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 PBX3P40426 434 aa12.51□□□□□ -0.41
YBX3-213ENST00000542641 SLC11A1P49279 550 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms