RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 NLRP14Q86W24 1093 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 CCDC103Q8IW40 242 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ZBED8Q8IZ13 594 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 SENP2Q9HC62 589 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 NRBP1Q9UHY1 535 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ARHGAP31Q2M1Z3 1444 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 LGALS16A8MUM7 142 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 SOX11P35716 441 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 MAPKAPK2P49137 400 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 RESP18Q5W5W9 173 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 FAM162AQ96A26 154 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 AP1M1Q9BXS5 423 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ERBB3P21860 1342 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 NARS2Q96I59 477 aaKnown RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 RPS6KB2Q9UBS0 482 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ABCB11O95342 1321 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 STAT3P40763 770 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 RANBP1P43487 201 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 GPC3P51654 580 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 CSNK2BP67870 215 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 PALB2Q86YC2 1186 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ZFYVE16Q7Z3T8 1539 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 H0Y3Z8 333 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 KRT6AP02538 564 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 NR3C1P04150 777 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 KRT6BP04259 564 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 KRT6CP48668 564 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CNGA3Q16281 694 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 FAM167BQ9BTA0 163 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 PLEKHA5Q9HAU0 1116 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 NFU1Q9UMS0 254 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 PCDHB6Q9Y5E3 794 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 GRID2IPA4D2P6 1211 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 TRADDQ15628 312 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 UBE2SQ16763 222 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 TCEAL5Q5H9L2 206 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 NEK10Q6ZWH5 1172 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CDKL3Q8IVW4 592 aaPredicted RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 THNSL1Q8IYQ7 743 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 GRAMD1AQ96CP6 724 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 IQCA1LA6NCM1 817 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 GOLGA8JA6NMD2 632 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CLK1P49759 484 aaKnown RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 CTTNQ14247 550 aaKnown RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 EFHC2Q5JST6 749 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.66□□□□□ -0.38
PCF11-201ENST00000298281 SPATA18Q8TC71 538 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CNGB3Q9NQW8 809 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 PCDHA6Q9UN73 950 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 PCDHA8Q9Y5H6 950 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CDH2P19022 906 aaPredicted RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 CDC16Q13042 620 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 PKP1Q13835 747 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 SGO1Q5FBB7 561 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 ANO5Q75V66 913 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 RIN3Q8TB24 985 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 SCFD1Q8WVM8 642 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 OSBP2Q969R2 916 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 MRPL4Q9BYD3 311 aaKnown RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 WNT8AQ9H1J5 351 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 MYO18AQ92614 2054 aaKnown RBP12.66□□□□□ -0.38
PCF11-201ENST00000298281 CDC40O60508 579 aaKnown RBP eCLIP12.66□□□□□ -0.382e-10■■■■□ 21.6
PCF11-201ENST00000298281 RESTQ13127 1097 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 KCNV1Q6PIU1 500 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 SPACA6W5XKT8 324 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 CDC42EP1Q00587 391 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 MFSD14CQ5VZR4 134 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 UBAP1Q9NZ09 502 aa12.66□□□□□ -0.38
PCF11-201ENST00000298281 MYH9P35579 1960 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 RASGRF1Q13972 1273 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 CYTH1Q15438 398 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 SARM1Q6SZW1 724 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 GRAMD1CQ8IYS0 662 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 PUS7LQ9H0K6 701 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 CCDC22O60826 627 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 ZNF24P17028 368 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 LAMB3Q13751 1172 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 ATP11CQ8NB49 1132 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 CATSPER1Q8NEC5 780 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 SEC31BQ9NQW1 1179 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 HSPBP1Q9NZL4 362 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 APPL1Q9UKG1 709 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 GOLGA8IPA6NC78 632 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 FAM187AA6NFU0 413 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 KIAA0391O15091 583 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 RARS2Q5T160 578 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 PADI6Q6TGC4 694 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 KRT74Q7RTS7 529 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 APOBEC3FQ8IUX4 373 aaKnown RBP12.65□□□□□ -0.38
PCF11-201ENST00000298281 CEP95Q96GE4 821 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 SLC4A9Q96Q91 983 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 TUFT1Q9NNX1 390 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 PLAAQ9Y263 795 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 SH3BP1Q9Y3L3 701 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 PCDHGA3Q9Y5H0 932 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 IQCMA0A1B0GVH7 501 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 ANGPT2O15123 496 aa12.65□□□□□ -0.38
PCF11-201ENST00000298281 HNRNPRO43390 633 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms