RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 IGSF9Q9P2J2 1179 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 FBXW11Q9UKB1 542 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 CLUHO75153 1309 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 VPS37CA5D8V6 355 aaPredicted RBP20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 CLDN3O15551 220 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 HNRNPA1P09651 372 aaKnown RBP eCLIP20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 NUBP1P53384 320 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 NCKAP1LP55160 1127 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 OSTNP61366 133 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 NOLC1Q14978 699 aaKnown RBP eCLIP20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 KYAT1Q16773 422 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 ANKS3Q6ZW76 656 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 GLYCTKQ8IVS8 523 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 RASSF8Q8NHQ8 419 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 NXPE3Q969Y0 559 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 ZNF707Q96C28 371 aaPredicted RBP20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 BACH2Q9BYV9 841 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 CCSER1Q9C0I3 900 aa20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.86■□□□□ 0.93
CCDC28A-203ENST00000617445 ASGR2P07307 311 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 HOXA9P31269 272 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 MCL1Q07820 350 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 RAB33AQ14088 237 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 UVSSAQ2YD98 709 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 LIN9Q5TKA1 542 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 HAUS6Q7Z4H7 955 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 GPBP1Q86WP2 473 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 FEZF2Q8TBJ5 459 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 RAD54LQ92698 747 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 PLEKHA5Q9HAU0 1116 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 PARVGQ9HBI0 331 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 EPS15L1Q9UBC2 864 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 MTRRQ9UBK8 725 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 BACE2Q9Y5Z0 518 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 DOCK8Q8NF50 2099 aa20.85■□□□□ 0.93
CCDC28A-203ENST00000617445 FAM13AO94988 1023 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 PLCG1P19174 1290 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 HOXD11P31277 338 aaPredicted RBP20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 ZNF131P52739 623 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 TDGQ13569 410 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 CD300LGQ6UXG3 332 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 ZBTB45Q96K62 511 aaPredicted RBP20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 TSPAN18Q96SJ8 248 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 REEP2Q9BRK0 252 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 KCNK12Q9HB15 430 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 BLOC1S4Q9NUP1 217 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 ANKFY1Q9P2R3 1169 aa20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 ZFP37Q9Y6Q3 630 aaPredicted RBP20.84■□□□□ 0.93
CCDC28A-203ENST00000617445 CACNA1HO95180 2353 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 NPHP3-ACAD11A0A0J9YXS1 232 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 PODXLO00592 558 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 SYN3O14994 580 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 POU2F2P09086 479 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 CLTAP09496 248 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 SYT1P21579 422 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 AVPR2P30518 371 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 GBP2P32456 591 aaPredicted RBP20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 DDIT3P35638 169 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 SOX4Q06945 474 aaPredicted RBP20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 MYCT1Q8N699 235 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 BICD1Q96G01 975 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 ZMAT2Q96NC0 199 aaKnown RBP20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 GOLGA2P5Q9HBQ8 144 aa20.83■□□□□ 0.93
CCDC28A-203ENST00000617445 PDCD11Q14690 1871 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 XYLBO75191 536 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 KRT18P05783 430 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 MYBP10242 640 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 HARSP12081 509 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 OR1D2P34982 312 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 MATR3P43243 847 aaKnown RBP eCLIP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 CACNB1Q02641 598 aaPredicted RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 MCM6Q14566 821 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 KARSQ15046 597 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 PTPAQ15257 358 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 SLC10A6Q3KNW5 377 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 PPM1LQ5SGD2 360 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 LARP4BQ92615 738 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 IRF2BPLQ9H1B7 796 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 CCDC39Q9UFE4 941 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 TBX20Q9UMR3 447 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 NUB1Q9Y5A7 615 aa20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 SRPRBQ9Y5M8 271 aaKnown RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 MORC2Q9Y6X9 1032 aaPredicted RBP20.82■□□□□ 0.92
CCDC28A-203ENST00000617445 TRAK2O60296 914 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 PIGRP01833 764 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 C8AP07357 584 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 TKTP29401 623 aaKnown RBP20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 LIG4P49917 911 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 PTPN5P54829 565 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 NHLH1Q02575 133 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 GRIN1Q05586 938 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 DHX8Q14562 1220 aaKnown RBP20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 C3orf58Q8NDZ4 430 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 ZSCAN16Q9H4T2 348 aaPredicted RBP20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 STK17AQ9UEE5 414 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 DUSP12Q9UNI6 340 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 CLIC4Q9Y696 253 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 DOCK6Q96HP0 2047 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 KMT2EQ8IZD2 1858 aa20.81■□□□□ 0.92
CCDC28A-203ENST00000617445 H7C4K7 107 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 184.6 ms