RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PCDHA5Q9Y5H7 936 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 SPTLC1O15269 473 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 ADAM12O43184 909 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 COL9A1P20849 921 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 BRCC3P46736 316 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 PMS1P54277 932 aaKnown RBP10.05□□□□□ -0.8
VPS35-206ENST00000565228 AMPD3Q01432 767 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 TFF2Q03403 129 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 RNASELQ05823 741 aaKnown RBP10.05□□□□□ -0.8
VPS35-206ENST00000565228 TUSC3Q13454 348 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 UPP1Q16831 310 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 PLPP4Q5VZY2 271 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 ISM2Q6H9L7 571 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 JADE1Q6IE81 842 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 KANK3Q6NY19 840 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 URGCPQ8TCY9 931 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 GPT2Q8TD30 523 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 TMEM175Q9BSA9 504 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 CCDC94Q9BW85 323 aaPredicted RBP10.05□□□□□ -0.8
VPS35-206ENST00000565228 UBN1Q9NPG3 1134 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 LMCD1Q9NZU5 365 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 CDH22Q9UJ99 828 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 AGO2Q9UKV8 859 aaKnown RBP10.05□□□□□ -0.8
VPS35-206ENST00000565228 FAN1Q9Y2M0 1017 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 RWDD3Q9Y3V2 267 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 PCDHB12Q9Y5F1 795 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 TSC2P49815 1807 aa10.05□□□□□ -0.8
VPS35-206ENST00000565228 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 C2orf71A6NGG8 1288 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 H0YCG3 227 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 EIF3DO15371 548 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS35-206ENST00000565228 TBX10O75333 385 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 THP07101 528 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CLTAP09496 248 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CASP4P49662 377 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 HSP90AA2PQ14568 343 aaPredicted RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 KCNB1Q14721 858 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 PTPN14Q15678 1187 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CTC1Q2NKJ3 1217 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 ZCWPW2Q504Y3 356 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 RTP2Q5QGT7 225 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 C1orf220Q5T0J3 134 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 KIAA0319Q5VV43 1072 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 LMBRD2Q68DH5 695 aaPredicted RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 RSPO2Q6UXX9 243 aaPredicted RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 DDX53Q86TM3 631 aaKnown RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 RBM23Q86U06 439 aaKnown RBP10.04□□□□□ -0.8
VPS35-206ENST00000565228 VPS52Q8N1B4 723 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 POMGNT1Q8WZA1 660 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 ZNF516Q92618 1163 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 FBXL18Q96ME1 805 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 TIGD1Q96MW7 591 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 MED15Q96RN5 788 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 RPS6KC1Q96S38 1066 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 TCF25Q9BQ70 676 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 FAM213AQ9BRX8 229 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 LRRC27Q9C0I9 530 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 TLR9Q9NR96 1032 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CHST7Q9NS84 486 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 DMAC2Q9NW81 257 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 HSPBP1Q9NZL4 362 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CLEC1BQ9P126 229 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 KANSL3Q9P2N6 904 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 KCNG1Q9UIX4 513 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 MAN1B1Q9UKM7 699 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 LZTS1Q9Y250 596 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 PCDHB13Q9Y5F0 798 aa10.04□□□□□ -0.8
VPS35-206ENST00000565228 CLASP2O75122 1294 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 ALDH2P05091 517 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 CTSAP10619 480 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 RPL17P18621 184 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 GARTP22102 1010 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 PRCPP42785 496 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 MATR3P43243 847 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS35-206ENST00000565228 NRIP1P48552 1158 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 ALDH7A1P49419 539 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 UBE2HP62256 183 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 DUSP6Q16828 381 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 KNOP1Q1ED39 458 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 FUT10Q6P4F1 479 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 PRSS55Q6UWB4 352 aaPredicted RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 BRSK2Q8IWQ3 736 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 MRPL43Q8N983 215 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 OR5B17Q8NGF7 314 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 ELMO3Q96BJ8 720 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 BORCS6Q96GS4 357 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 POP1Q99575 1024 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 PYM1Q9BRP8 204 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 HERC2P3Q9BVR0 1158 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 LMAN2LQ9H0V9 348 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 NSUN3Q9H649 340 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 PDE11AQ9HCR9 933 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 AAASQ9NRG9 546 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 TOPORSQ9NS56 1045 aaPredicted RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 EXOC1Q9NV70 894 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 RAPGEFL1Q9UHV5 662 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 SIX4Q9UIU6 781 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 MTCL1Q9Y4B5 1905 aaKnown RBP10.03□□□□□ -0.8
VPS35-206ENST00000565228 C2orf16Q68DN1 1984 aa10.03□□□□□ -0.8
VPS35-206ENST00000565228 BDP1A6H8Y1 2624 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms