RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 WNT7BP56706 349 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 SMAD3P84022 425 aaKnown RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 POU5F1Q01860 360 aaKnown RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 PSMD6Q15008 389 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 DCAF17Q5H9S7 520 aaPredicted RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 SPATA1Q5VX52 437 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 ALKAL1Q6UXT8 129 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 ZNF280BQ86YH2 543 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 AOPEPQ8N6M6 819 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 BEST2Q8NFU1 509 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 C18orf25Q96B23 403 aaPredicted RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 ZMAT2Q96NC0 199 aaKnown RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 FUCA2Q9BTY2 467 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 MKNK1Q9BUB5 465 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 NRDE2Q9H7Z3 1164 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 GOLGA2P5Q9HBQ8 144 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 MAGEC2Q9UBF1 373 aaPredicted RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 TUBGCP4Q9UGJ1 667 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 LINC01553A4QN01 128 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 DDHD2O94830 711 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 LAG3P18627 525 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 CTNNB1P35222 781 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 PBX3P40426 434 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 ZNF165P49910 485 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 VAMP7P51809 220 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 GUCY2FP51841 1108 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 MYL5Q02045 173 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 TUSC3Q13454 348 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 HSP90AA4PQ58FG1 418 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 XKR4Q5GH76 650 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 TCERG1LQ5VWI1 586 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 PPP2R2DQ66LE6 453 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 FOXR2Q6PJQ5 311 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 INTS8Q75QN2 995 aaKnown RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 FILIP1Q7Z7B0 1213 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 USP37Q86T82 979 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 ZC3H3Q8IXZ2 948 aaKnown RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 EFCAB13Q8IY85 973 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 GSTCDQ8NEC7 633 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 SP7Q8TDD2 431 aaPredicted RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 CACTINQ8WUQ7 758 aaKnown RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 TMEM174Q8WUU8 243 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 RABGGTAQ92696 567 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 ANKRD36BP1Q96IX9 119 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 FAM84AQ96KN4 292 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 MFSD14AQ96MC6 490 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 PPP1R10Q96QC0 940 aaKnown RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 MED15Q96RN5 788 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 CGRRF1Q99675 332 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 TSPY26PQ9H489 355 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 MMRN2Q9H8L6 949 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 SLC28A3Q9HAS3 691 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 AAASQ9NRG9 546 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 CACNG4Q9UBN1 327 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 DNAJB4Q9UDY4 337 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 ARMCX3Q9UH62 379 aaPredicted RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 MTUS1Q9ULD2 1270 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 UBQLN1Q9UMX0 589 aaKnown RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 PRG3Q9Y2Y8 225 aaPredicted RBP16.21■□□□□ 0.19
NUP54-213ENST00000513352 DERAQ9Y315 318 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 NFE2L3Q9Y4A8 694 aa16.21■□□□□ 0.19
NUP54-213ENST00000513352 MAPK13O15264 365 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 CLSTN1O94985 981 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 ARHGEF15O94989 841 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 TNNC2P02585 160 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 ALDH7A1P49419 539 aaKnown RBP16.2■□□□□ 0.18
NUP54-213ENST00000513352 BFSP1Q12934 665 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 LRIT3Q3SXY7 679 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 LRSAM1Q6UWE0 723 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 FAM114A1Q8IWE2 563 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 COLGALT1Q8NBJ5 622 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 ENOX1Q8TC92 643 aaKnown RBP16.2■□□□□ 0.18
NUP54-213ENST00000513352 TMC2Q8TDI7 906 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 TIFAQ96CG3 184 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 CNOT6LQ96LI5 555 aaKnown RBP16.2■□□□□ 0.18
NUP54-213ENST00000513352 ZNF558Q96NG5 402 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 TSPAN18Q96SJ8 248 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 POP1Q99575 1024 aaKnown RBP16.2■□□□□ 0.18
NUP54-213ENST00000513352 MTMR12Q9C0I1 747 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 THAP9Q9H5L6 903 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 CWH43Q9H720 699 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 R3HCC1Q9Y3T6 440 aaKnown RBP16.2■□□□□ 0.18
NUP54-213ENST00000513352 C2CD2Q9Y426 696 aa16.2■□□□□ 0.18
NUP54-213ENST00000513352 LRRIQ3A6PVS8 624 aaPredicted RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 BECN2A8MW95 431 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 NT5C1B-RDH14C9J2C7 533 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 B4GALT3O60512 393 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 GNA14O95837 355 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 TRIM49P0CI25 452 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 TRIM49CP0CI26 452 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 MTIF2P46199 727 aaKnown RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 SLC11A1P49279 550 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 BCAR1P56945 870 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 DLG4P78352 724 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 SOX4Q06945 474 aaPredicted RBP16.19■□□□□ 0.18
NUP54-213ENST00000513352 BIRC3Q13489 604 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 KCNT2Q6UVM3 1135 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 WDR49Q8IV35 697 aa16.19■□□□□ 0.18
NUP54-213ENST00000513352 COLGALT2Q8IYK4 626 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms