RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 UBE2TQ9NPD8 197 aaPredicted RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 DDX20Q9UHI6 824 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 B4GALT5O43286 388 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 FAM189A1O60320 539 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 TSPAN1O60635 241 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 CCND3P30281 292 aaPredicted RBP19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 PIK3CAP42336 1068 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 ARID5AQ03989 594 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 DUOXA2Q1HG44 320 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 PPP1R16BQ96T49 567 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 PDZD7Q9H5P4 517 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 RAB21Q9UL25 225 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 SCN10AQ9Y5Y9 1956 aa19.61■□□□□ 0.73
CCDC88C-203ENST00000389856 MYADML2A6NDP7 307 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 TREHO43280 583 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 GPR32O75388 356 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 ERLIN1O75477 346 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 TNNC2P02585 160 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 DARSP14868 501 aaKnown RBP19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 ARF4P18085 180 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 CRYBB1P53674 252 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 GCNT1Q02742 428 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 TRIM32Q13049 653 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 PHLDB3Q6NSJ2 640 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 CC2D1AQ6P1N0 951 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 CXCL17Q6UXB2 119 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 IRF2BP2Q7Z5L9 587 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 SESTD1Q86VW0 696 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 CD302Q8IX05 232 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 THNSL1Q8IYQ7 743 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 KLHDC9Q8NEP7 349 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 TRIM58Q8NG06 486 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 TAS1R2Q8TE23 839 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 DNAJB3Q8WWF6 145 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 PARD6BQ9BYG5 372 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 IFIH1Q9BYX4 1025 aaKnown RBP19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 GTF2IRD1Q9UHL9 959 aa19.6■□□□□ 0.73
CCDC88C-203ENST00000389856 A0A1B0GUA9 196 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 TTLL13PA6NNM8 815 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 RBAK-RBAKDNI3L0D1 243 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 C4BPAP04003 597 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 PNMA6AP0CW24 399 aaPredicted RBP19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 EIF4BP23588 611 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 MCM3P25205 808 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 SLC18A3Q16572 532 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 NBPF20Q3BBV1 942 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 NOTUMQ6P988 496 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 RUFY4Q6ZNE9 571 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 PPM1KQ8N3J5 372 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 ANKRD36BP1Q96IX9 119 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 TOPORSQ9NS56 1045 aaPredicted RBP19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 GINS2Q9Y248 185 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 SAR1BQ9Y6B6 198 aa19.59■□□□□ 0.73
CCDC88C-203ENST00000389856 PJA2O43164 708 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 B4GALT4O60513 344 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 TACC1O75410 805 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 HLA-DRAP01903 254 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 IQCF3P0C7M6 154 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 TMEM191BP0C7N4 346 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 TBXAS1P24557 533 aaPredicted RBP19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 PTPN11Q06124 597 aaPredicted RBP19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 ARHGAP44Q17R89 818 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 FAM47CQ5HY64 1035 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 ZBTB41Q5SVQ8 909 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 EEF1DP3Q658K8 133 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 GJB7Q6PEY0 223 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 NT5DC4Q86YG4 428 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 SECISBP2LQ93073 1101 aaKnown RBP19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 FAM212AQ96EL1 285 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 ASB7Q9H672 318 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 HMX1Q9NP08 348 aaPredicted RBP19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 PCDHA13Q9Y5I0 950 aa19.58■□□□□ 0.73
CCDC88C-203ENST00000389856 ATP8B3O60423 1300 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 EVI5O60447 810 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 ASGR1P07306 291 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 PLEKP08567 350 aaPredicted RBP19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 STAG3L1P0CL83 205 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 PRLRP16471 622 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 MAGEA1P43355 309 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 IRX5P78411 483 aaPredicted RBP19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 KCNA10Q16322 511 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 ASTE1Q2TB18 679 aaPredicted RBP19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 SLC27A1Q6PCB7 646 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF296Q8WUU4 475 aaPredicted RBP19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 OSMRQ99650 979 aa19.58■□□□□ 0.72
CCDC88C-203ENST00000389856 MOXD2PA6NHM9 499 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 ABL1P00519 1130 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 TNFSF9P41273 254 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 TMEM62Q0P6H9 643 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 TRPC3Q13507 836 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 TDRD10Q5VZ19 366 aaKnown RBP19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 ARHGEF19Q8IW93 802 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 RNF10Q8N5U6 811 aaKnown RBP19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 ZNF516Q92618 1163 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 SEMA4DQ92854 862 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 CPB2Q96IY4 423 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 ACAP3Q96P50 834 aa19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 TSEN34Q9BSV6 310 aaKnown RBP19.57■□□□□ 0.72
CCDC88C-203ENST00000389856 JRKLQ9Y4A0 524 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms