RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 HOXB8P17481 243 aaPredicted RBP18.2■□□□□ 0.5
SREBF1-219ENST00000580540 PROZP22891 400 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 LIG4P49917 911 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 PKP1Q13835 747 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 NOLC1Q14978 699 aaKnown RBP eCLIP18.2■□□□□ 0.5
SREBF1-219ENST00000580540 USP41Q3LFD5 358 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 TPRNQ4KMQ1 711 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 ZPBP2Q6X784 338 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 PPFIBP1Q86W92 1011 aa18.2■□□□□ 0.5
SREBF1-219ENST00000580540 C12orf76Q8N812 135 aaPredicted RBP18.2■□□□□ 0.5
SREBF1-219ENST00000580540 POP1Q99575 1024 aaKnown RBP18.2■□□□□ 0.5
SREBF1-219ENST00000580540 SMIM28A0A1B0GU29 152 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 BDP1A6H8Y1 2624 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 ABLIM1O14639 778 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 LILRB3O75022 631 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 KIF4AO95239 1232 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 MYBP10242 640 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 NMT1P30419 496 aaKnown RBP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 ZNF131P52739 623 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 RARS2Q5T160 578 aaKnown RBP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 KIAA0319Q5VV43 1072 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 CES5AQ6NT32 575 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 KANK3Q6NY19 840 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 CEP57Q86XR8 500 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 GLYCTKQ8IVS8 523 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 SLC22A17Q8WUG5 538 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 RIN2Q8WYP3 895 aaPredicted RBP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 KHSRPQ92945 711 aaKnown RBP eCLIP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 PPP1R10Q96QC0 940 aaKnown RBP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 S1PR5Q9H228 398 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 EPHX3Q9H6B9 360 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 TBX20Q9UMR3 447 aa18.19■□□□□ 0.5
SREBF1-219ENST00000580540 MORC2Q9Y6X9 1032 aaPredicted RBP18.19■□□□□ 0.5
SREBF1-219ENST00000580540 SF3B1O75533 1304 aaKnown RBP eCLIP18.19■□□□□ 0.55e-7■■■■□ 20.1
SREBF1-219ENST00000580540 A0A087X0B3 334 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 MYMKA6NI61 221 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 HNRNPDLO14979 420 aaKnown RBP18.18■□□□□ 0.5
SREBF1-219ENST00000580540 TEX28O15482 410 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 PPP6R2O75170 966 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 YEATS4O95619 227 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 ADH1AP07327 375 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 WEE2P0C1S8 567 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 DSG1Q02413 1049 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 NAB2Q15742 525 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 FAM171A1Q5VUB5 890 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 RNF168Q8IYW5 571 aaPredicted RBP18.18■□□□□ 0.5
SREBF1-219ENST00000580540 DDX12PQ92771 950 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 RPGRIP1Q96KN7 1286 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 GOLGA2P5Q9HBQ8 144 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 DZANK1Q9NVP4 752 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 CDH22Q9UJ99 828 aa18.18■□□□□ 0.5
SREBF1-219ENST00000580540 TRIP11Q15643 1979 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 B3GAT3O94766 335 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 BRD1O95696 1058 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 EFEMP2O95967 443 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 IDEP14735 1019 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 CLCNKBP51801 687 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 CBX2Q14781 532 aaPredicted RBP18.17■□□□□ 0.5
SREBF1-219ENST00000580540 ZC2HC1CQ53FD0 456 aaPredicted RBP18.17■□□□□ 0.5
SREBF1-219ENST00000580540 SFR1Q86XK3 245 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 PALB2Q86YC2 1186 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 SUSD6Q92537 303 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 SNX27Q96L92 541 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 FBXL18Q96ME1 805 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 PHF7Q9BWX1 381 aaPredicted RBP18.17■□□□□ 0.5
SREBF1-219ENST00000580540 CHST7Q9NS84 486 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 TBC1D7Q9P0N9 293 aa18.17■□□□□ 0.5
SREBF1-219ENST00000580540 C19orf67A6NJJ6 358 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 CUTAO60888 179 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 RPL17P18621 184 aaKnown RBP18.16■□□□□ 0.5
SREBF1-219ENST00000580540 SCP2P22307 547 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 SP100P23497 879 aaPredicted RBP18.16■□□□□ 0.5
SREBF1-219ENST00000580540 CLCN4P51793 760 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 MCL1Q07820 350 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 DCLRE1AQ6PJP8 1040 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 PRSS55Q6UWB4 352 aaPredicted RBP18.16■□□□□ 0.5
SREBF1-219ENST00000580540 ALKAL1Q6UXT8 129 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 TMC5Q6UXY8 1006 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 STAMQ92783 540 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 ZMAT2Q96NC0 199 aaKnown RBP18.16■□□□□ 0.5
SREBF1-219ENST00000580540 TTPALQ9BTX7 342 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 HAPLN2Q9GZV7 340 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 ADAM7Q9H2U9 754 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 MRPL44Q9H9J2 332 aaKnown RBP18.16■□□□□ 0.5
SREBF1-219ENST00000580540 SLC38A7Q9NVC3 462 aa18.16■□□□□ 0.5
SREBF1-219ENST00000580540 MYH15Q9Y2K3 1946 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 GLUD1P00367 558 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 SPATA31D3P0C874 917 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 CXCL8P10145 99 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 IGFBP6P24592 240 aaPredicted RBP18.15■□□□□ 0.5
SREBF1-219ENST00000580540 ME1P48163 572 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 GTF2BQ00403 316 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 DNM1Q05193 864 aaKnown RBP18.15■□□□□ 0.5
SREBF1-219ENST00000580540 ITIH3Q06033 890 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 SOX4Q06945 474 aaPredicted RBP18.15■□□□□ 0.5
SREBF1-219ENST00000580540 SPAG1Q07617 926 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 ELAVL2Q12926 359 aaKnown RBP18.15■□□□□ 0.5
SREBF1-219ENST00000580540 SLC10A6Q3KNW5 377 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 XKR4Q5GH76 650 aa18.15■□□□□ 0.5
SREBF1-219ENST00000580540 HERC4Q5GLZ8 1057 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms