RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	GPD1L	Q8N335	351 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	GUCD1	Q96NT3	240 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	POLD4	Q9HCU8	107 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	DPP7	Q9UHL4	492 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	GDA	Q9Y2T3	454 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	TDRD15	B5MCY1	1934 aa	Known RBP	11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	KLRC4	O43908	158 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	ZC3H11A	O75152	810 aa	Known RBP eCLIP	11.65	□□□□□ -0.54	3e-14	■■□□□ 13.2
UBR4-208	ENST00000459947	GALT	P07902	379 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	GATM	P50440	423 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	AP3M2	P53677	418 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	COLGALT2	Q8IYK4	626 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	STAM	Q92783	540 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	IGSF21	Q96ID5	467 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	BLZF1	Q9H2G9	400 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	TLR9	Q9NR96	1032 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	COG5	Q9UP83	839 aa		11.65	□□□□□ -0.54
UBR4-208	ENST00000459947	MYB	P10242	640 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	DCLRE1A	Q6PJP8	1040 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	PPFIBP1	Q86W92	1011 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	BRSK2	Q8IWQ3	736 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	KLHL23	Q8NBE8	558 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	PCDH10	Q9P2E7	1040 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	CPSF3	Q9UKF6	684 aa	Known RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	MAPK13	O15264	365 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	HARS	P12081	509 aa	Known RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	SLC9A9	Q8IVB4	645 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	SPPL3	Q8TCT6	385 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	4e-8	■■■■■ 68.9
UBR4-208	ENST00000459947	PRPF6	O94906	941 aa	Known RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	LINC00271	P0C7V0	271 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	ALKAL1	Q6UXT8	129 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	MYLIP	Q8WY64	445 aa		11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	PPP1R10	Q96QC0	940 aa	Known RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.64	□□□□□ -0.55
UBR4-208	ENST00000459947	ZNF233	A6NK53	670 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	EDN1	P05305	212 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	AKAP5	P24588	427 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	SLC11A1	P49279	550 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	AAK1	Q2M2I8	961 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	CIT	O14578	2027 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	FSCN2	O14926	492 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	POMC	P01189	267 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	ITGB1	P05556	798 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	IGFBP4	P22692	258 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	OR1G1	P47890	313 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	SNW1	Q13573	536 aa	Known RBP	11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	PUS10	Q3MIT2	529 aa	Known RBP	11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	LRRC55	Q6ZSA7	311 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	GDPD5	Q8WTR4	605 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	EMILIN2	Q9BXX0	1053 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	RNF39	Q9H2S5	420 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	TTC26	A0AVF1	554 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	UROD	P06132	367 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	PNPLA4	P41247	253 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	CDR2L	Q86X02	465 aa	Predicted RBP	11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	XXYLT1	Q8NBI6	393 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	POF1B	Q8WVV4	589 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	ZNF560	Q96MR9	790 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	DACH1	Q9UI36	760 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	FAM50B	Q9Y247	325 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	HES2	Q9Y543	173 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	MTCH2	Q9Y6C9	303 aa		11.63	□□□□□ -0.55
UBR4-208	ENST00000459947	SMIM28	A0A1B0GU29	152 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	LRPAP1	P30533	357 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	TMEM132D	Q14C87	1099 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	EDRF1	Q3B7T1	1238 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SCFD1	Q8WVM8	642 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SLC39A2	Q9NP94	309 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	ENTPD7	Q9NQZ7	604 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	IRAK3	Q9Y616	596 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	NRP1	O14786	923 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	TADA2A	O75478	443 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SOD2	P04179	222 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SLC39A4	Q6P5W5	647 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947		Q7L0L9	218 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	MAFA	Q8NHW3	353 aa	Predicted RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SPATA18	Q8TC71	538 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	ZBTB45	Q96K62	511 aa	Predicted RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	AGPAT3	Q9NRZ7	376 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	ADAM28	Q9UKQ2	775 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	BICDL2	A1A5D9	508 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	TTLL13P	A6NNM8	815 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	ANKRD63	C9JTQ0	380 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	PSMA7	O14818	248 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	FGFR1OP	O95684	399 aa	Known RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	CTSA	P10619	480 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	SPATA20	Q8TB22	786 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	KIF12	Q96FN5	646 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	KLK14	Q9P0G3	267 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	MTUS1	Q9ULD2	1270 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	TRAF3IP3	Q9Y228	551 aa		11.62	□□□□□ -0.55
UBR4-208	ENST00000459947	PDCD11	Q14690	1871 aa	Known RBP	11.62	□□□□□ -0.55
UBR4-208	ENST00000459947		H7C4K7	107 aa		11.61	□□□□□ -0.55
UBR4-208	ENST00000459947	PTGES	O14684	152 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms