RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 LIG1P18858 919 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 CDC25AP30304 524 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 PTPN21Q16825 1174 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 ATF7IP2Q5U623 682 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 RINT1Q6NUQ1 792 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 FUT10Q6P4F1 479 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 C15orf39Q6ZRI6 1047 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 C1orf186Q6ZWK4 172 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 TAS1R1Q7RTX1 841 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 GPR149Q86SP6 731 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 PLCD3Q8N3E9 789 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 C12orf76Q8N812 135 aaPredicted RBP20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 CMASQ8NFW8 434 aaPredicted RBP20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 HDAC7Q8WUI4 952 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 RHOBTB2Q9BYZ6 727 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 KCND2Q9NZV8 630 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 FNIP2Q9P278 1114 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 TNFSF13BQ9Y275 285 aa20.99■□□□□ 0.95
CCDC28A-203ENST00000617445 ZNF318Q5VUA4 2279 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 CCDC169A6NNP5 214 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 TEX28O15482 410 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 HIP1RO75146 1068 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 RECQL4O94761 1208 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 BMP15O95972 392 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 GLUD1P00367 558 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 GUCY2CP25092 1073 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 NPTX2P47972 431 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 PEX3P56589 373 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 SIGLEC14Q08ET2 396 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 HSP90AA2PQ14568 343 aaPredicted RBP20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 HFE2Q6ZVN8 426 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 AK8Q96MA6 479 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 NTPCRQ9BSD7 190 aaKnown RBP20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 KIFC3Q9BVG8 833 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 TSHZ2Q9NRE2 1034 aa20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 SF3B1O75533 1304 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 MTCL1Q9Y4B5 1905 aaKnown RBP20.98■□□□□ 0.95
CCDC28A-203ENST00000617445 ZDBF2Q9HCK1 2354 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 TMEM221A6NGB7 291 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 M0R296 226 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 ELAVL2Q12926 359 aaKnown RBP20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 NT5DC1Q5TFE4 455 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 EEF1DP3Q658K8 133 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 TMC5Q6UXY8 1006 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 BRAPQ7Z569 592 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 ZDHHC14Q8IZN3 488 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 DAW1Q8N136 415 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 CDK5RAP3Q96JB5 506 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 MRPL4Q9BYD3 311 aaKnown RBP20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 GPR62Q9BZJ7 368 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 PLEKHA4Q9H4M7 779 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 POLD4Q9HCU8 107 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 KMT5AQ9NQR1 393 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 ARHGAP28Q9P2N2 729 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 MYH11P35749 1972 aa20.97■□□□□ 0.95
CCDC28A-203ENST00000617445 TRIP11Q15643 1979 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 VWA3AA6NCI4 1184 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 PTGESO14684 152 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 EDN1P05305 212 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 SMTNP53814 917 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 ZBTB33Q86T24 672 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 SYT2Q8N9I0 419 aaPredicted RBP20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 TDRD5Q8NAT2 981 aaKnown RBP20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 SPIRE2Q8WWL2 714 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 ACO2Q99798 780 aaKnown RBP20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 RUSC1Q9BVN2 902 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 MAN1C1Q9NR34 630 aa20.96■□□□□ 0.95
CCDC28A-203ENST00000617445 C2CD4DB7Z1M9 353 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 F8W810 466 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 PDCP20941 246 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 MAPK7Q13164 816 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 ZRSR1Q15695 479 aaKnown RBP20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 PDXDC1Q6P996 788 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 OTOP3Q7RTS5 596 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 KCNK18Q7Z418 384 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 UBALD2Q8IYN6 164 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 PBXIP1Q96AQ6 731 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 ACSF2Q96CM8 615 aaPredicted RBP20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 CCDC94Q9BW85 323 aaPredicted RBP20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 TOPORSQ9NS56 1045 aaPredicted RBP20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 CDH22Q9UJ99 828 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 SORCS3Q9UPU3 1222 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 USP20Q9Y2K6 914 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 GDAQ9Y2T3 454 aa20.95■□□□□ 0.94
CCDC28A-203ENST00000617445 PIEZO1Q92508 2521 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 PAPLNO95428 1278 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 WEE2P0C1S8 567 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 GRM5P41594 1212 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 YARSP54577 528 aaKnown RBP20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 CUL4AQ13619 759 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 NAB2Q15742 525 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 KANK3Q6NY19 840 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 CCDC149Q6ZUS6 474 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 RIN2Q8WYP3 895 aaPredicted RBP20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 UROC1Q96N76 676 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 PNMA5Q96PV4 448 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 TTPALQ9BTX7 342 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 PTPRHQ9HD43 1115 aa20.94■□□□□ 0.94
CCDC28A-203ENST00000617445 PLXNA3P51805 1871 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 DENND4AQ7Z401 1863 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms