RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	UBN1	Q9NPG3	1134 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	RBAK	Q9NYW8	714 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	PARP2	Q9UGN5	583 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	LTBP2	Q14767	1821 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	GOLGA8IP	A6NC78	632 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	GOLGA8J	A6NMD2	632 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904		C9IYK1	514 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZNF623	O75123	536 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	KRT13	P13646	458 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	PPP2R3A	Q06190	1150 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	CCDC40	Q4G0X9	1142 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	NPAS4	Q8IUM7	802 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM186B	Q8IYM0	893 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	ANKRD20A12P	Q8NF67	263 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM200A	Q8TCP9	573 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	LINC01599	Q8WXQ3	324 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	EEF2KMT	Q96G04	330 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	RPS6KC1	Q96S38	1066 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	MKNK1	Q9BUB5	465 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	SRRT	Q9BXP5	876 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	HAPLN2	Q9GZV7	340 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	ELAC1	Q9H777	363 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	TMEM161A	Q9NX61	479 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	NFE2L3	Q9Y4A8	694 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904	HES2	Q9Y543	173 aa		13.62	□□□□□ -0.23
ABCD4-223	ENST00000555904		H0YGN5	161 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	IKBKB	O14920	756 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	MAPK13	O15264	365 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	RECQL4	O94761	1208 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	IL18RAP	O95256	599 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	WDR5	P61964	334 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	POU5F1	Q01860	360 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	SURF1	Q15526	300 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	SEZ6	Q53EL9	994 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	GLB1L	Q6UWU2	654 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	INTS8	Q75QN2	995 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	CREBRF	Q8IUR6	639 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	CEP120	Q8N960	986 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	RDH13	Q8NBN7	331 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	SMG8	Q8ND04	991 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	URGCP	Q8TCY9	931 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	RSPH1	Q8WYR4	309 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM212A	Q96EL1	285 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	DUSP9	Q99956	384 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.61	□□□□□ -0.23	1e-8	■□□□□ 11.2
ABCD4-223	ENST00000555904	UBE2O	Q9C0C9	1292 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	THAP9	Q9H5L6	903 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	RSAD1	Q9HA92	442 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	PLEKHA5	Q9HAU0	1116 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	METTL14	Q9HCE5	456 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	DMAC2	Q9NW81	257 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	SNTG2	Q9NY99	539 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	PCDH10	Q9P2E7	1040 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	CPSF3	Q9UKF6	684 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	GIT1	Q9Y2X7	761 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	SLC4A7	Q9Y6M7	1214 aa		13.61	□□□□□ -0.23
ABCD4-223	ENST00000555904	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM189A1	O60320	539 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	AKAP3	O75969	853 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	TPM2	P07951	284 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	CXCL8	P10145	99 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	AKAP5	P24588	427 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	TNFSF9	P41273	254 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	EPHB4	P54760	987 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM189B	P81408	668 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	TCTN1	Q2MV58	587 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	TMEM240	Q5SV17	173 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	LRRC55	Q6ZSA7	311 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	C16orf59	Q7L2K0	433 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	FILIP1	Q7Z7B0	1213 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	MRPL10	Q7Z7H8	261 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	CBWD2	Q8IUF1	395 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	CD302	Q8IX05	232 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	HERVK_113	Q902F9	699 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	RNPC3	Q96LT9	517 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	FBXL18	Q96ME1	805 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	FNBP1	Q96RU3	617 aa		13.6	□□□□□ -0.23
ABCD4-223	ENST00000555904	SCN5A	Q14524	2016 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	STX10	O60499	249 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	UPP2	O95045	317 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	CDK11B	P21127	795 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	MLH1	P40692	756 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	CASP4	P49662	377 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	SPAG1	Q07617	926 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	ENOX2	Q16206	610 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZBTB41	Q5SVQ8	909 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	BRSK2	Q8IWQ3	736 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	LPP	Q93052	612 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	CCDC127	Q96BQ5	260 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	VWCE	Q96DN2	955 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	SNX27	Q96L92	541 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	CNOT6L	Q96LI5	555 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	TSPAN18	Q96SJ8	248 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	SLC9A7	Q96T83	725 aa		13.59	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZBED2	Q9BTP6	218 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms