RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PTPRHQ9HD43 1115 aa21.34■■□□□ 1.01
USP40-207ENST00000450940 KCNG1Q9UIX4 513 aa21.34■■□□□ 1.01
USP40-207ENST00000450940 MTCL1Q9Y4B5 1905 aaKnown RBP21.33■■□□□ 1.01
USP40-207ENST00000450940 PRR33A8MZF0 331 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 C1RP00736 705 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 SSBP05455 408 aaKnown RBP eCLIP21.33■■□□□ 1.01
USP40-207ENST00000450940 URODP06132 367 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 GLUD2P49448 558 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 ZRSR1Q15695 479 aaKnown RBP21.33■■□□□ 1.01
USP40-207ENST00000450940 APBB1IPQ7Z5R6 666 aaPredicted RBP21.33■■□□□ 1.01
USP40-207ENST00000450940 CABP7Q86V35 215 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 GPR62Q9BZJ7 368 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 CXCL16Q9H2A7 254 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 KMT5AQ9NQR1 393 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 ADAM28Q9UKQ2 775 aa21.33■■□□□ 1.01
USP40-207ENST00000450940 PLXNA3P51805 1871 aa21.32■■□□□ 1
USP40-207ENST00000450940 FAM86C2PA6NEL3 165 aa21.32■■□□□ 1
USP40-207ENST00000450940 THP07101 528 aa21.32■■□□□ 1
USP40-207ENST00000450940 PLA2G4BP0C869 781 aa21.32■■□□□ 1
USP40-207ENST00000450940 KLRC2P26717 231 aa21.32■■□□□ 1
USP40-207ENST00000450940 LONP1P36776 959 aaKnown RBP21.32■■□□□ 1
USP40-207ENST00000450940 MTHFRP42898 656 aa21.32■■□□□ 1
USP40-207ENST00000450940 SF3A1Q15459 793 aaKnown RBP21.32■■□□□ 1
USP40-207ENST00000450940 FUT10Q6P4F1 479 aa21.32■■□□□ 1
USP40-207ENST00000450940 KCNN1Q92952 543 aa21.32■■□□□ 1
USP40-207ENST00000450940 CDK5RAP3Q96JB5 506 aa21.32■■□□□ 1
USP40-207ENST00000450940 RPGRIP1Q96KN7 1286 aa21.32■■□□□ 1
USP40-207ENST00000450940 FBXL18Q96ME1 805 aa21.32■■□□□ 1
USP40-207ENST00000450940 MUTYHQ9UIF7 546 aa21.32■■□□□ 1
USP40-207ENST00000450940 DENND4AQ7Z401 1863 aa21.31■■□□□ 1
USP40-207ENST00000450940 VPS37CA5D8V6 355 aaPredicted RBP21.31■■□□□ 1
USP40-207ENST00000450940 SFI1A8K8P3 1242 aa21.31■■□□□ 1
USP40-207ENST00000450940 TEX28O15482 410 aa21.31■■□□□ 1
USP40-207ENST00000450940 PLS3P13797 630 aa21.31■■□□□ 1
USP40-207ENST00000450940 SYT1P21579 422 aa21.31■■□□□ 1
USP40-207ENST00000450940 PROZP22891 400 aa21.31■■□□□ 1
USP40-207ENST00000450940 HSP90AA2PQ14568 343 aaPredicted RBP21.31■■□□□ 1
USP40-207ENST00000450940 USP41Q3LFD5 358 aa21.31■■□□□ 1
USP40-207ENST00000450940 ARSHQ5FYA8 562 aa21.31■■□□□ 1
USP40-207ENST00000450940 KIAA1841Q6NSI8 718 aa21.31■■□□□ 1
USP40-207ENST00000450940 C12orf76Q8N812 135 aaPredicted RBP21.31■■□□□ 1
USP40-207ENST00000450940 RIPOR3Q96MK2 946 aa21.31■■□□□ 1
USP40-207ENST00000450940 PLIN2Q99541 437 aa21.31■■□□□ 1
USP40-207ENST00000450940 PAAF1Q9BRP4 392 aa21.31■■□□□ 1
USP40-207ENST00000450940 MRPL4Q9BYD3 311 aaKnown RBP21.31■■□□□ 1
USP40-207ENST00000450940 CDH22Q9UJ99 828 aa21.31■■□□□ 1
USP40-207ENST00000450940 CITO14578 2027 aa21.3■■□□□ 1
USP40-207ENST00000450940 C2CD2LO14523 706 aa21.3■■□□□ 1
USP40-207ENST00000450940 ABLIM1O14639 778 aa21.3■■□□□ 1
USP40-207ENST00000450940 SLC16A4O15374 487 aa21.3■■□□□ 1
USP40-207ENST00000450940 BRD1O95696 1058 aa21.3■■□□□ 1
USP40-207ENST00000450940 ADH1AP07327 375 aa21.3■■□□□ 1
USP40-207ENST00000450940 UBA7P41226 1012 aa21.3■■□□□ 1
USP40-207ENST00000450940 GRM5P41594 1212 aa21.3■■□□□ 1
USP40-207ENST00000450940 GRIN1Q05586 938 aa21.3■■□□□ 1
USP40-207ENST00000450940 XKR4Q5GH76 650 aa21.3■■□□□ 1
USP40-207ENST00000450940 RARS2Q5T160 578 aaKnown RBP21.3■■□□□ 1
USP40-207ENST00000450940 ALKAL1Q6UXT8 129 aa21.3■■□□□ 1
USP40-207ENST00000450940 TMEM161BQ8NDZ6 487 aa21.3■■□□□ 1
USP40-207ENST00000450940 LRRC15Q8TF66 581 aa21.3■■□□□ 1
USP40-207ENST00000450940 EDAQ92838 391 aa21.3■■□□□ 1
USP40-207ENST00000450940 PPP1R10Q96QC0 940 aaKnown RBP21.3■■□□□ 1
USP40-207ENST00000450940 TARS2Q9BW92 718 aaKnown RBP21.3■■□□□ 1
USP40-207ENST00000450940 CDT1Q9H211 546 aa21.3■■□□□ 1
USP40-207ENST00000450940 POMKQ9H5K3 350 aa21.3■■□□□ 1
USP40-207ENST00000450940 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.3■■□□□ 1
USP40-207ENST00000450940 FNIP2Q9P278 1114 aa21.3■■□□□ 1
USP40-207ENST00000450940 GDAQ9Y2T3 454 aa21.3■■□□□ 1
USP40-207ENST00000450940 TECTAO75443 2155 aa21.29■■□□□ 1
USP40-207ENST00000450940 C2orf16Q68DN1 1984 aa21.29■■□□□ 1
USP40-207ENST00000450940 TADA2AO75478 443 aa21.29■■□□□ 1
USP40-207ENST00000450940 PAPLNO95428 1278 aa21.29■■□□□ 1
USP40-207ENST00000450940 RESTQ13127 1097 aa21.29■■□□□ 1
USP40-207ENST00000450940 PTPAQ15257 358 aa21.29■■□□□ 1
USP40-207ENST00000450940 ATAT1Q5SQI0 421 aa21.29■■□□□ 1
USP40-207ENST00000450940 KANK3Q6NY19 840 aa21.29■■□□□ 1
USP40-207ENST00000450940 GPR149Q86SP6 731 aa21.29■■□□□ 1
USP40-207ENST00000450940 RABGGTAQ92696 567 aa21.29■■□□□ 1
USP40-207ENST00000450940 CALML4Q96GE6 196 aa21.29■■□□□ 1
USP40-207ENST00000450940 SFXN1Q9H9B4 322 aa21.29■■□□□ 1
USP40-207ENST00000450940 BLOC1S4Q9NUP1 217 aa21.29■■□□□ 1
USP40-207ENST00000450940 CACNG4Q9UBN1 327 aa21.29■■□□□ 1
USP40-207ENST00000450940 RAPGEFL1Q9UHV5 662 aa21.29■■□□□ 1
USP40-207ENST00000450940 ARIH1Q9Y4X5 557 aaPredicted RBP21.29■■□□□ 1
USP40-207ENST00000450940 SF3B1O75533 1304 aaKnown RBP eCLIP21.29■■□□□ 1
USP40-207ENST00000450940 MYO10Q9HD67 2058 aa21.28■■□□□ 1
USP40-207ENST00000450940 MAPTP10636 758 aaKnown RBP21.28■■□□□ 1
USP40-207ENST00000450940 MCF2P10911 925 aa21.28■■□□□ 1
USP40-207ENST00000450940 SMTNP53814 917 aa21.28■■□□□ 1
USP40-207ENST00000450940 RAD51AP2Q09MP3 1159 aa21.28■■□□□ 1
USP40-207ENST00000450940 CMASQ8NFW8 434 aaPredicted RBP21.28■■□□□ 1
USP40-207ENST00000450940 HDAC7Q8WUI4 952 aa21.28■■□□□ 1
USP40-207ENST00000450940 RHOBTB2Q9BYZ6 727 aa21.28■■□□□ 1
USP40-207ENST00000450940 CCSER1Q9C0I3 900 aa21.28■■□□□ 1
USP40-207ENST00000450940 ODF2LQ9ULJ1 636 aa21.28■■□□□ 1
USP40-207ENST00000450940 NR2E1Q9Y466 385 aa21.28■■□□□ 1
USP40-207ENST00000450940 CLIC4Q9Y696 253 aa21.28■■□□□ 1
USP40-207ENST00000450940 VWA8A3KMH1 1905 aa21.27■■□□□ 1
USP40-207ENST00000450940 CASTOR2A6NHX0 329 aa21.27■■□□□ 1
USP40-207ENST00000450940 TMEM189-UBE2V1I3L0A0 370 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms