RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 NXPE3Q969Y0 559 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 CCDC43Q96MW1 224 aaKnown RBP15.29■□□□□ 0.04
CXCL12-202ENST00000374426 MTMR9Q96QG7 549 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 PRKD2Q9BZL6 878 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 PIDD1Q9HB75 910 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 BRMS1Q9HCU9 246 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.29■□□□□ 0.04
CXCL12-202ENST00000374426 PARP2Q9UGN5 583 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 DNAH14Q0VDD8 3507 aa15.29■□□□□ 0.04
CXCL12-202ENST00000374426 MTCL1Q9Y4B5 1905 aaKnown RBP15.28■□□□□ 0.04
CXCL12-202ENST00000374426 POTEMA6NI47 508 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 LRRIQ4A6NIV6 560 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 BTBD18B2RXH4 712 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 LARGE1O95461 756 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 SPATA31C1P0DKV0 1188 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 HSP90AA2PQ14568 343 aaPredicted RBP15.28■□□□□ 0.04
CXCL12-202ENST00000374426 PRSS55Q6UWB4 352 aaPredicted RBP15.28■□□□□ 0.04
CXCL12-202ENST00000374426 PPP4R3CPQ6ZMV5 832 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 GET4Q7L5D6 327 aaPredicted RBP15.28■□□□□ 0.04
CXCL12-202ENST00000374426 ADSSL1Q8N142 457 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 GPR152Q8TDT2 470 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 TBC1D17Q9HA65 648 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 CA14Q9ULX7 337 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 GPR179Q6PRD1 2367 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 OTOGLQ3ZCN5 2332 aa15.28■□□□□ 0.04
CXCL12-202ENST00000374426 DOCK6Q96HP0 2047 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 SF3B1O75533 1304 aaKnown RBP eCLIP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 TTLL13PA6NNM8 815 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 ANHXE9PGG2 379 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 STK25O00506 426 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 PTGESO14684 152 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 TADA2AO75478 443 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 ZMYND10O75800 440 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 XRCC6P12956 609 aaKnown RBP eCLIP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 CREMQ03060 361 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 TUSC3Q13454 348 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 HTR4Q13639 388 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 ANKRD1Q15327 319 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 ME3Q16798 604 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 CDCA2Q69YH5 1023 aaPredicted RBP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 MAEAQ7L5Y9 396 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 DIS3L2Q8IYB7 885 aaKnown RBP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 ST13P5Q8NFI4 369 aaPredicted RBP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 HASPINQ8TF76 798 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 GTF3C6Q969F1 213 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 PRIMPOLQ96LW4 560 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 TMEM60Q9H2L4 133 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 FZD8Q9H461 694 aa15.27■□□□□ 0.04
CXCL12-202ENST00000374426 PRMT7Q9NVM4 692 aaPredicted RBP15.27■□□□□ 0.04
CXCL12-202ENST00000374426 CEP250Q9BV73 2442 aa15.27■□□□□ 0.03
CXCL12-202ENST00000374426 CASTOR2A6NHX0 329 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 KIF4AO95239 1232 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 ANAPC15P60006 121 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 FOXK2Q01167 660 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 FAM187BQ17R55 369 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 CATSPER3Q86XQ3 398 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 NSUN7Q8NE18 718 aaKnown RBP15.26■□□□□ 0.03
CXCL12-202ENST00000374426 PIK3R5Q8WYR1 880 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 CLSTN3Q9BQT9 956 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 TTPALQ9BTX7 342 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 CXCL16Q9H2A7 254 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 PDZD7Q9H5P4 517 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 FBXW11Q9UKB1 542 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 NUMBLQ9Y6R0 609 aa15.26■□□□□ 0.03
CXCL12-202ENST00000374426 JAK2O60674 1132 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 MED24O75448 989 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 RFX1P22670 979 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 FOSBP53539 338 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 NAB2Q15742 525 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 FAM171A1Q5VUB5 890 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 PHLDB3Q6NSJ2 640 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 GRASPQ7Z6J2 395 aaPredicted RBP15.25■□□□□ 0.03
CXCL12-202ENST00000374426 MCPH1Q8NEM0 835 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 LNX1Q8TBB1 728 aaPredicted RBP15.25■□□□□ 0.03
CXCL12-202ENST00000374426 BSNDQ8WZ55 320 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 RPP25Q9BUL9 199 aaKnown RBP15.25■□□□□ 0.03
CXCL12-202ENST00000374426 TUFT1Q9NNX1 390 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 ARHGEF3Q9NR81 526 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 SLC2A4RGQ9NR83 387 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 SNTG2Q9NY99 539 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 DLGAP2Q9P1A6 1054 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 USP20Q9Y2K6 914 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 CACNA1IQ9P0X4 2223 aa15.25■□□□□ 0.03
CXCL12-202ENST00000374426 N4BP3O15049 544 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 ADAM12O43184 909 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 RECQL4O94761 1208 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 EDN1P05305 212 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 THP07101 528 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 DCNP07585 359 aaKnown RBP15.24■□□□□ 0.03
CXCL12-202ENST00000374426 ATP2B1P20020 1258 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 FSHRP23945 695 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 NTHL1P78549 312 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 PSMD5Q16401 504 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 SPECC1Q5M775 1068 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 CEP57Q86XR8 500 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 ZBTB8OSQ8IWT0 167 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 FGF14Q92915 247 aa15.24■□□□□ 0.03
CXCL12-202ENST00000374426 ZFP37Q9Y6Q3 630 aaPredicted RBP15.24■□□□□ 0.03
CXCL12-202ENST00000374426 C8AP07357 584 aa15.23■□□□□ 0.03
CXCL12-202ENST00000374426 HNRNPA1P09651 372 aaKnown RBP eCLIP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms