RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C IES6P32617 166 aa1.15□□□□□ -2.23
VPS54YDR027C EBP2P36049 427 aaKnown RBP1.15□□□□□ -2.23
VPS54YDR027C SOL2P37262 315 aa1.15□□□□□ -2.23
VPS54YDR027C RCY1P39531 840 aa1.15□□□□□ -2.23
VPS54YDR027C SOP4P39543 234 aaPredicted RBP1.15□□□□□ -2.23
VPS54YDR027C AGP3P43548 558 aa1.15□□□□□ -2.23
VPS54YDR027C SED5Q01590 340 aa1.15□□□□□ -2.23
VPS54YDR027C COX20Q04935 205 aa1.15□□□□□ -2.23
VPS54YDR027C RPL21BQ12672 160 aaKnown RBP1.15□□□□□ -2.23
VPS54YDR027C TDH3P00359 332 aaKnown RBP RIP-Chip data1.14□□□□□ -2.23not detected
VPS54YDR027C COX4P04037 155 aa1.14□□□□□ -2.23
VPS54YDR027C CTA1P15202 515 aa1.14□□□□□ -2.23
VPS54YDR027C GCG1P32656 232 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C YUH1P35127 236 aa1.14□□□□□ -2.23
VPS54YDR027C COS9P36034 407 aa1.14□□□□□ -2.23
VPS54YDR027C YHR035WP38769 630 aa1.14□□□□□ -2.23
VPS54YDR027C STB1P42845 420 aa1.14□□□□□ -2.23
VPS54YDR027C EMC2P47133 292 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C UBC13P52490 153 aa1.14□□□□□ -2.23
VPS54YDR027C VHT1P53241 593 aa1.14□□□□□ -2.23
VPS54YDR027C MPP6P53725 186 aaPredicted RBP1.14□□□□□ -2.23
VPS54YDR027C SPP2Q02521 185 aa1.14□□□□□ -2.23
VPS54YDR027C MRX11Q03079 207 aa1.14□□□□□ -2.23
VPS54YDR027C BCP1Q06338 283 aa1.14□□□□□ -2.23
VPS54YDR027C TAZ1Q06510 381 aa1.14□□□□□ -2.23
VPS54YDR027C MRX9Q07349 420 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C POM33Q12164 279 aa1.14□□□□□ -2.23
VPS54YDR027C ATP6P00854 259 aa1.14□□□□□ -2.23
VPS54YDR027C STE7P06784 515 aa1.14□□□□□ -2.23
VPS54YDR027C RPL31AP0C2H8 113 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C ERD1P16151 362 aa1.14□□□□□ -2.23
VPS54YDR027C MRPL20P22354 195 aaPredicted RBP1.14□□□□□ -2.23
VPS54YDR027C URA10P30402 227 aa1.14□□□□□ -2.23
VPS54YDR027C DEP1P31385 405 aa1.14□□□□□ -2.23
VPS54YDR027C IMP3P32899 183 aaPredicted RBP1.14□□□□□ -2.23
VPS54YDR027C CBF5P33322 483 aaKnown RBP RIP-Chip data1.14□□□□□ -2.23not detected
VPS54YDR027C KTI12P34253 313 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C YKL071WP36086 256 aa1.14□□□□□ -2.23
VPS54YDR027C RPC37P36121 282 aa1.14□□□□□ -2.23
VPS54YDR027C PHO88P38264 188 aaPredicted RBP1.14□□□□□ -2.23
VPS54YDR027C HIS2P38635 335 aa1.14□□□□□ -2.23
VPS54YDR027C ASG7P46993 209 aa1.14□□□□□ -2.23
VPS54YDR027C YJL118WP47022 219 aa1.14□□□□□ -2.23
VPS54YDR027C KEL2P50090 882 aa1.14□□□□□ -2.23
VPS54YDR027C LSB1P53281 241 aa1.14□□□□□ -2.23
VPS54YDR027C MRPS16Q02608 121 aa1.14□□□□□ -2.23
VPS54YDR027C RMI1Q02685 241 aa1.14□□□□□ -2.23
VPS54YDR027C BER1Q06688 274 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C RPN8Q08723 338 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C RFM1Q12192 310 aa1.14□□□□□ -2.23
VPS54YDR027C YOL107WQ12239 342 aa1.14□□□□□ -2.23
VPS54YDR027C UTP23Q12339 254 aaKnown RBP1.14□□□□□ -2.23
VPS54YDR027C BGL2P15703 313 aaKnown RBP1.13□□□□□ -2.23
VPS54YDR027C RPL16BP26785 198 aaKnown RBP1.13□□□□□ -2.23
VPS54YDR027C COT1P32798 439 aa1.13□□□□□ -2.23
VPS54YDR027C GPX1P36014 167 aa1.13□□□□□ -2.23
VPS54YDR027C MCH2P36032 473 aa1.13□□□□□ -2.23
VPS54YDR027C MRPL27P36526 146 aaPredicted RBP1.13□□□□□ -2.23
VPS54YDR027C SHQ1P40486 507 aaPredicted RBP1.13□□□□□ -2.23
VPS54YDR027C YIA6P40556 373 aa1.13□□□□□ -2.23
VPS54YDR027C FLC3P53121 802 aa1.13□□□□□ -2.23
VPS54YDR027C CDC14Q00684 551 aa1.13□□□□□ -2.23
VPS54YDR027C RRN5Q02983 363 aa1.13□□□□□ -2.23
VPS54YDR027C ASR1Q06834 288 aa1.13□□□□□ -2.23
VPS54YDR027C SRO7Q12038 1033 aa1.13□□□□□ -2.23
VPS54YDR027C RAX2Q12465 1220 aa1.13□□□□□ -2.23
VPS54YDR027C YSR3P23501 404 aa1.13□□□□□ -2.23
VPS54YDR027C YCR025CP25352 136 aa1.13□□□□□ -2.23
VPS54YDR027C INO2P26798 304 aa1.13□□□□□ -2.23
VPS54YDR027C SMP1P38128 452 aa1.13□□□□□ -2.23
VPS54YDR027C LSM4P40070 187 aaKnown RBP1.13□□□□□ -2.23
VPS54YDR027C SWC4P53201 476 aa1.13□□□□□ -2.23
VPS54YDR027C YNL040WP53960 456 aaPredicted RBP1.13□□□□□ -2.23
VPS54YDR027C TPS1Q00764 495 aaKnown RBP1.13□□□□□ -2.23
VPS54YDR027C GMC1Q04399 608 aa1.13□□□□□ -2.23
VPS54YDR027C API2Q04413 109 aa1.13□□□□□ -2.23
VPS54YDR027C YDR018CQ12185 396 aa1.13□□□□□ -2.23
VPS54YDR027C PRM4Q12498 284 aa1.13□□□□□ -2.23
VPS54YDR027C IZH4Q99393 312 aa1.13□□□□□ -2.23
VPS54YDR027C COA1P40452 197 aa1.12□□□□□ -2.23
VPS54YDR027C YGL262WP53054 175 aa1.12□□□□□ -2.23
VPS54YDR027C YPS5P53057 165 aa1.12□□□□□ -2.23
VPS54YDR027C RPL21AQ02753 160 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C TLG1Q03322 224 aa1.12□□□□□ -2.23
VPS54YDR027C YLR446WQ06204 433 aa1.12□□□□□ -2.23
VPS54YDR027C CTS2Q06350 511 aa1.12□□□□□ -2.23
VPS54YDR027C YOL029CQ08187 201 aa1.12□□□□□ -2.23
VPS54YDR027C YOR114WQ12219 294 aa1.12□□□□□ -2.23
VPS54YDR027C LAG2Q92325 660 aa1.12□□□□□ -2.23
VPS54YDR027C COX2P00410 251 aa1.12□□□□□ -2.23
VPS54YDR027C RSR1P13856 272 aa1.12□□□□□ -2.23
VPS54YDR027C POL30P15873 258 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C FPR1P20081 114 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C RME1P32338 300 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C SPT4P32914 102 aaPredicted RBP1.12□□□□□ -2.23
VPS54YDR027C GPI18P38211 433 aa1.12□□□□□ -2.23
VPS54YDR027C ATG12P38316 186 aa1.12□□□□□ -2.23
VPS54YDR027C TAE1P38340 232 aa1.12□□□□□ -2.23
VPS54YDR027C RRT13P40042 185 aa1.12□□□□□ -2.23
VPS54YDR027C NUP84P52891 726 aa1.12□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 78.6 ms