RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	QRI5	P32344	111 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	MRX3	P38172	270 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	ASP1	P38986	381 aa	Predicted RBP	1.71	□□□□□ -2.14
NCL1	YBL024W	BDH1	P39714	382 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	SMB1	P40018	196 aa	Known RBP	1.71	□□□□□ -2.14
NCL1	YBL024W	EDC2	P40023	145 aa	Predicted RBP	1.71	□□□□□ -2.14
NCL1	YBL024W	YIL054W	P40524	105 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	YJR012C	P47087	207 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	COQ5	P49017	307 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	LIF1	P53150	421 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	YGR067C	P53243	804 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	YDL211C	Q12121	372 aa		1.71	□□□□□ -2.14
NCL1	YBL024W	ZIP1	P31111	875 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	ALK2	P32789	676 aa	Predicted RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	MRPS9	P38120	278 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	POP8	P38208	133 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	SHC1	P39000	512 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	FRT2	P39734	528 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	YER085C	P40058	173 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	YFL012W	P43580	148 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	COG7	P53195	279 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	CAX4	P53223	239 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	MYO5	Q04439	1219 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	ARC18	Q05933	178 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	STH1	P32597	1359 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	MATALPHA1	P0CY06	175 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	HMLALPHA1	P0CY07	175 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	RPL4A	P10664	362 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	TCP1	P12612	559 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	FUS3	P16892	353 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	EHD3	P28817	500 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	MSN4	P33749	630 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	DSN1	P40568	576 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	RPL4B	P49626	362 aa	Known RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	SMD1	Q02260	146 aa	Predicted RBP	1.7	□□□□□ -2.14
NCL1	YBL024W	YDL144C	Q07589	356 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	AI5_BETA	Q9ZZX0	354 aa		1.7	□□□□□ -2.14
NCL1	YBL024W	YMR316C-A	I2HB70	103 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	TDH2	P00358	332 aa	Known RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	RPS5	P26783	225 aa	Known RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	KRE6	P32486	720 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	CAT2	P32796	670 aa	Known RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	YBL081W	P38180	368 aa	Known RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	1.69	□□□□□ -2.14	not detected
NCL1	YBL024W	LDB7	P38210	180 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	YBR096W	P38256	230 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	YHL049C	P38722	271 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	RTR1	P40084	226 aa	Predicted RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	SYS1	P41544	203 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	UFD1	P53044	361 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	YNL095C	P53932	642 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	CTF19	Q02732	369 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	YDR209C	Q03480	137 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	RUD3	Q12234	484 aa	Known RBP	1.69	□□□□□ -2.14
NCL1	YBL024W	SNF8	Q12483	233 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	YPL119C-A	Q3E751	87 aa		1.69	□□□□□ -2.14
NCL1	YBL024W	ARG80	P07249	177 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	CPT1	P17898	393 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	PHO80	P20052	293 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	RNA15	P25299	296 aa	Predicted RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	CAM1	P29547	415 aa	Known RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	HOM6	P31116	359 aa	Known RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	JEN1	P36035	616 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	MED8	P38304	223 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	AVT6	P40074	448 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	HOC1	P47124	396 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	JHD2	P47156	728 aa	Predicted RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	HSH155	P49955	971 aa	Known RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	OSH6	Q02201	448 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	MRX8	Q05473	314 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	YLR283W	Q05867	314 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	ATG5	Q12380	294 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	VPS3	P23643	1011 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	PRE7	P23724	241 aa	Known RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	TPS2	P31688	896 aa	Known RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	SRB4	P32569	687 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	MID2	P36027	376 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	HMT1	P38074	348 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	FLC3	P53121	802 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	MRPL50	P53724	139 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	SWT21	P53873	357 aa	Predicted RBP	1.68	□□□□□ -2.14
NCL1	YBL024W	PLB3	Q08108	686 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	CSM4	Q08955	156 aa		1.68	□□□□□ -2.14
NCL1	YBL024W	COS2	P0CX12	379 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	COS3	P0CX13	379 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	CKA2	P19454	339 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	RPO26	P20435	155 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	OSM1	P21375	501 aa	Known RBP	1.67	□□□□□ -2.14
NCL1	YBL024W	BMH2	P34730	273 aa	Known RBP	1.67	□□□□□ -2.14
NCL1	YBL024W	GCN20	P43535	752 aa	Known RBP	1.67	□□□□□ -2.14
NCL1	YBL024W	COS4	P43542	379 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	HST4	P53688	370 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	1.67	□□□□□ -2.14	not detected
NCL1	YBL024W	ASI3	P53983	676 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	KRE28	Q04431	385 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	YPL264C	Q08980	353 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	ERG2	P32352	222 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	PHO89	P38361	574 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	ARN2	P38724	620 aa		1.67	□□□□□ -2.14
NCL1	YBL024W	YHL044W	P38727	235 aa		1.67	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 44.8 ms