RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 MPZL3Q6UWV2 235 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 TCHPQ9BT92 498 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 CWH43Q9H720 699 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 LMCD1Q9NZU5 365 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 MTUS1Q9ULD2 1270 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 USP20Q9Y2K6 914 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 PCDHB13Q9Y5F0 798 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 PCDHB12Q9Y5F1 795 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 KIAA1671Q9BY89 1806 aa28.25■■■□□ 2.11
TRIM28-204ENST00000594806 H3BNC9 293 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 POU3F3P20264 500 aaPredicted RBP28.24■■■□□ 2.11
TRIM28-204ENST00000594806 ZNF568Q3ZCX4 644 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 LONRF3Q496Y0 759 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 LRRC55Q6ZSA7 311 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 STXBP4Q6ZWJ1 553 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 UNC13DQ70J99 1090 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 MAP4K3Q8IVH8 894 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 BICD1Q96G01 975 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 PAGE5Q96GU1 130 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 STRA6Q9BX79 667 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 HES2Q9Y543 173 aa28.24■■■□□ 2.11
TRIM28-204ENST00000594806 PPP1R37O75864 691 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 AFMP43652 599 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 LIG4P49917 911 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 COASYQ13057 564 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 KANK3Q6NY19 840 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 SPRED2Q7Z698 418 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 RNF39Q9H2S5 420 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 TBC1D13Q9NVG8 400 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 PARP2Q9UGN5 583 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 EXOC7Q9UPT5 735 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 STXBP5LQ9Y2K9 1186 aa28.23■■■□□ 2.11
TRIM28-204ENST00000594806 HNRNPDLO14979 420 aaKnown RBP28.22■■■□□ 2.11
TRIM28-204ENST00000594806 CLDN3O15551 220 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 ZNF202O95125 648 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 MYLIPQ8WY64 445 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 APOL6Q9BWW8 343 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 CDT1Q9H211 546 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 GOLPH3LQ9H4A5 285 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 INPP5FQ9Y2H2 1132 aa28.22■■■□□ 2.11
TRIM28-204ENST00000594806 CHD9Q3L8U1 2897 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 ARL5CA6NH57 179 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 EPOPA6NHQ4 379 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 ABLIM1O14639 778 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 GTPBP6O43824 516 aaPredicted RBP28.21■■■□□ 2.11
TRIM28-204ENST00000594806 FOSL2P15408 326 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 PPM1AP35813 382 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 GRM5P41594 1212 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 RNASELQ05823 741 aaKnown RBP28.21■■■□□ 2.11
TRIM28-204ENST00000594806 MCL1Q07820 350 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 GPM6BQ13491 265 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 KYAT1Q16773 422 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 KRBA2Q6ZNG9 492 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 COLGALT1Q8NBJ5 622 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 TMEM87AQ8NBN3 555 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 ZNF558Q96NG5 402 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 GAD1Q99259 594 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 CCDC94Q9BW85 323 aaPredicted RBP28.21■■■□□ 2.11
TRIM28-204ENST00000594806 LMAN2LQ9H0V9 348 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 SNTG2Q9NY99 539 aa28.21■■■□□ 2.11
TRIM28-204ENST00000594806 TDRD15B5MCY1 1934 aaKnown RBP28.2■■■□□ 2.11
TRIM28-204ENST00000594806 LPXNO60711 386 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 GCNT3O95395 438 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 AKAP5P24588 427 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 CUL4BQ13620 913 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 NOLC1Q14978 699 aaKnown RBP eCLIP28.2■■■□□ 2.15e-7■■□□□ 14.3
TRIM28-204ENST00000594806 PTPROQ16827 1216 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 ZC2HC1CQ53FD0 456 aaPredicted RBP28.2■■■□□ 2.1
TRIM28-204ENST00000594806 L1TD1Q5T7N2 865 aaKnown RBP28.2■■■□□ 2.1
TRIM28-204ENST00000594806 SLFN12LQ6IEE8 588 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 FAM193BQ96PV7 902 aaPredicted RBP28.2■■■□□ 2.1
TRIM28-204ENST00000594806 ACCSQ96QU6 501 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 RPS6KC1Q96S38 1066 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 TOPORSQ9NS56 1045 aaPredicted RBP28.2■■■□□ 2.1
TRIM28-204ENST00000594806 TBC1D7Q9P0N9 293 aa28.2■■■□□ 2.1
TRIM28-204ENST00000594806 MLH1P40692 756 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 ALDH7A1P49419 539 aaKnown RBP28.19■■■□□ 2.1
TRIM28-204ENST00000594806 YARSP54577 528 aaKnown RBP28.19■■■□□ 2.1
TRIM28-204ENST00000594806 EHHADHQ08426 723 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 KCNT2Q6UVM3 1135 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 TMEM175Q9BSA9 504 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 BLZF1Q9H2G9 400 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 TMEM206Q9H813 350 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 ANKFY1Q9P2R3 1169 aa28.19■■■□□ 2.1
TRIM28-204ENST00000594806 RFXAPO00287 272 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 RECQL4O94761 1208 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 UBE3AQ05086 875 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 FAM160A1Q05DH4 1040 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 ADGRE1Q14246 886 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 POSTNQ15063 836 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 TPRNQ4KMQ1 711 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 FAM26FQ5R3K3 315 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 ZBTB33Q86T24 672 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 FMR1NBQ8N0W7 255 aaPredicted RBP28.18■■■□□ 2.1
TRIM28-204ENST00000594806 KLHL23Q8NBE8 558 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 GDPD5Q8WTR4 605 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 ZBTB45Q96K62 511 aaPredicted RBP28.18■■■□□ 2.1
TRIM28-204ENST00000594806 NRDE2Q9H7Z3 1164 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 PLAGL2Q9UPG8 496 aa28.18■■■□□ 2.1
TRIM28-204ENST00000594806 CITO14578 2027 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms