RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CDR2LQ86X02 465 aaPredicted RBP33.29■■■□□ 2.92
CTCF-203ENST00000566078 CCDC155Q8N6L0 562 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 ZNF333Q96JL9 665 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 PTPRHQ9HD43 1115 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 CITO14578 2027 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 RPLP2P05387 115 aaKnown RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 ARF4P18085 180 aaPredicted RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 VAMP7P51809 220 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 HSP90AA2PQ14568 343 aaPredicted RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 SNX17Q15036 470 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 PKN2Q16513 984 aaKnown RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 CELF4Q9BZC1 486 aaKnown RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 TRPV2Q9Y5S1 764 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 CDY2AQ9Y6F7 541 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 ZNF233A6NK53 670 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 EIF4BP23588 611 aaKnown RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 ACOT2P49753 483 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 CYP24A1Q07973 514 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 CATSPER4Q7RTX7 472 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 SLC43A3Q8NBI5 491 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 PLEKHO2Q8TD55 490 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 TMEM40Q8WWA1 233 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 TRIM44Q96DX7 344 aaPredicted RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 MFSD14AQ96MC6 490 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 PCMTD1Q96MG8 357 aaPredicted RBP33.28■■■□□ 2.92
CTCF-203ENST00000566078 PDZD7Q9H5P4 517 aa33.28■■■□□ 2.92
CTCF-203ENST00000566078 SFPQP23246 707 aaKnown RBP eCLIP33.27■■■□□ 2.92
CTCF-203ENST00000566078 DLG4P78352 724 aa33.27■■■□□ 2.92
CTCF-203ENST00000566078 TBX2Q13207 712 aaPredicted RBP33.27■■■□□ 2.92
CTCF-203ENST00000566078 ZBTB41Q5SVQ8 909 aa33.27■■■□□ 2.92
CTCF-203ENST00000566078 KLK7P49862 253 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 PTK7Q13308 1070 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 PCBP1Q15365 356 aaKnown RBP eCLIP33.26■■■□□ 2.91
CTCF-203ENST00000566078 CRELD2Q6UXH1 353 aaPredicted RBP33.26■■■□□ 2.91
CTCF-203ENST00000566078 RPAINQ86UA6 219 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 CDT1Q9H211 546 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 MMRN2Q9H8L6 949 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP33.26■■■□□ 2.918e-8■■■■□ 21.6
CTCF-203ENST00000566078 RALGAPA2Q2PPJ7 1873 aa33.26■■■□□ 2.91
CTCF-203ENST00000566078 TULP1O00294 542 aaPredicted RBP33.25■■■□□ 2.91
CTCF-203ENST00000566078 OGTO15294 1046 aa33.25■■■□□ 2.91
CTCF-203ENST00000566078 CTSHP09668 335 aa33.25■■■□□ 2.91
CTCF-203ENST00000566078 SEZ6Q53EL9 994 aa33.25■■■□□ 2.91
CTCF-203ENST00000566078 ARVCFO00192 962 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 FAM189A1O60320 539 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 THPOP40225 353 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 GSDMDP57764 484 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 DHX38Q92620 1227 aaKnown RBP33.24■■■□□ 2.91
CTCF-203ENST00000566078 CCDC127Q96BQ5 260 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 ARMC5Q96C12 935 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 RBAKQ9NYW8 714 aaPredicted RBP33.24■■■□□ 2.91
CTCF-203ENST00000566078 SIK3Q9Y2K2 1263 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 FMO5P49326 533 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 PPFIBP1Q86W92 1011 aa33.24■■■□□ 2.91
CTCF-203ENST00000566078 NCBP1Q09161 790 aaKnown RBP33.23■■■□□ 2.91
CTCF-203ENST00000566078 MGAT3Q09327 533 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 TRIM14Q14142 442 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 C1orf220Q5T0J3 134 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 USP37Q86T82 979 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 TMC2Q8TDI7 906 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 PARD3BQ8TEW8 1205 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 CRACR2AQ9BSW2 395 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 SENP6Q9GZR1 1112 aaPredicted RBP33.23■■■□□ 2.91
CTCF-203ENST00000566078 TRPV6Q9H1D0 765 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 TRIP11Q15643 1979 aa33.23■■■□□ 2.91
CTCF-203ENST00000566078 LRRIQ3A6PVS8 624 aaPredicted RBP33.22■■■□□ 2.91
CTCF-203ENST00000566078 B4GALT4O60513 344 aa33.22■■■□□ 2.91
CTCF-203ENST00000566078 MCF2P10911 925 aa33.22■■■□□ 2.91
CTCF-203ENST00000566078 TNFSF9P41273 254 aa33.22■■■□□ 2.91
CTCF-203ENST00000566078 MCCD1P59942 119 aaPredicted RBP33.22■■■□□ 2.91
CTCF-203ENST00000566078 ARID5BQ14865 1188 aa33.22■■■□□ 2.91
CTCF-203ENST00000566078 U2AF1L4Q8WU68 220 aaKnown RBP33.22■■■□□ 2.91
CTCF-203ENST00000566078 CRISPLD2Q9H0B8 497 aa33.22■■■□□ 2.91
CTCF-203ENST00000566078 A0A1B0GUA9 196 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 CHRNA1P02708 482 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 GYPCP04921 128 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 MYL7Q01449 175 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 RBL2Q08999 1139 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 KCNMA1Q12791 1236 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 PSMD6Q15008 389 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 CBWD6Q4V339 395 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 CBWD3Q5JTY5 395 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 CBWD5Q5RIA9 395 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 THNSL1Q8IYQ7 743 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 AGPAT5Q9NUQ2 364 aa33.21■■■□□ 2.91
CTCF-203ENST00000566078 SGPL1O95470 568 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 ENPEPQ07075 957 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 PPP3CAQ08209 521 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 GOLGA8FQ08AF8 430 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 GOLGA8DPQ0D2H9 430 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 TRIM71Q2Q1W2 868 aaKnown RBP33.2■■■□□ 2.91
CTCF-203ENST00000566078 CCDC150Q8NCX0 1101 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 CPLX3Q8WVH0 158 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 ADPGKQ9BRR6 497 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 SEZ6LQ9BYH1 1024 aa33.2■■■□□ 2.91
CTCF-203ENST00000566078 NOC2LQ9Y3T9 749 aaKnown RBP33.2■■■□□ 2.91
CTCF-203ENST00000566078 GTPBP10A4D1E9 387 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 STX10O60499 249 aa33.2■■■□□ 2.9
CTCF-203ENST00000566078 TFRCP02786 760 aaKnown RBP33.2■■■□□ 2.9
CTCF-203ENST00000566078 TPM1P09493 284 aa33.2■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms