RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	TRAIP	Q9BWF2	469 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	OSBPL7	Q9BZF2	842 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	CDT1	Q9H211	546 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	SEMA6B	Q9H3T3	888 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	KIAA1586	Q9HCI6	787 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	RGS18	Q9NS28	235 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	FAM105A	Q9NUU6	356 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	HSPBP1	Q9NZL4	362 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	FRMD4B	Q9Y2L6	1034 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	PCDHB2	Q9Y5E7	798 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	STYXL1	Q9Y6J8	313 aa		13.66	□□□□□ -0.22
ABCD4-223	ENST00000555904	ALPK3	Q96L96	1907 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	TRIM49B	A6NDI0	452 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	BECN2	A8MW95	431 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	TULP1	O00294	542 aa	Predicted RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	CETN3	O15182	167 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	CLIC2	O15247	247 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	OGT	O15294	1046 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	FGB	P02675	491 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ACR	P10323	421 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	IBSP	P21815	317 aa	Predicted RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	STX17	P56962	302 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZNF445	P59923	1031 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	TPM4	P67936	248 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	MYL5	Q02045	173 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ADAM9	Q13443	819 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	MYBPC2	Q14324	1141 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	DSC3	Q14574	896 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	NFIL3	Q16649	462 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZCWPW2	Q504Y3	356 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	EEF1DP3	Q658K8	133 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	CEP135	Q66GS9	1140 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ANKRD40	Q6AI12	368 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	THNSL1	Q8IYQ7	743 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	GPD1L	Q8N335	351 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	XXYLT1	Q8NBI6	393 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	RNF169	Q8NCN4	708 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	PGBD4	Q96DM1	585 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	ZBTB45	Q96K62	511 aa	Predicted RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	BPIFA3	Q9BQP9	254 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	FUCA2	Q9BTY2	467 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	IKZF4	Q9H2S9	585 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	PCIF1	Q9H4Z3	704 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	PTPRH	Q9HD43	1115 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	LRFN2	Q9ULH4	789 aa		13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904	MKI67	P46013	3256 aa	Known RBP	13.65	□□□□□ -0.22
ABCD4-223	ENST00000555904		A0A0U1RQF3	1178 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZBBX	A8MT70	800 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	EXTL3	O43909	919 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	MGEA5	O60502	916 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	AMH	P03971	560 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	CLTA	P09496	248 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	STAG3L1	P0CL83	205 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	EPB41	P11171	864 aa	Known RBP	13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	ADSS	P30520	456 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	RGS19	P49795	217 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	PMS1	P54277	932 aa	Known RBP	13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	OSTN	P61366	133 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	TTI2	Q6NXR4	508 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	OTOP2	Q7RTS6	562 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	USP37	Q86T82	979 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	SLC9A9	Q8IVB4	645 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM114A1	Q8IWE2	563 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	TMEM174	Q8WUU8	243 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	SAAL1	Q96ER3	474 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	FAM213A	Q9BRX8	229 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	APOL6	Q9BWW8	343 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	EIF2A	Q9BY44	585 aa	Known RBP	13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	IPP	Q9Y573	584 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	PCDHB7	Q9Y5E2	793 aa		13.64	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZNF233	A6NK53	670 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	SMTNL1	A8MU46	457 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	GOLGA6L19	H0YKK7	550 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ENPP3	O14638	875 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ABLIM1	O14639	778 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	SLC16A3	O15427	465 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	HOXA2	O43364	376 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	GNA14	O95837	355 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	EOMES	O95936	686 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ITGA4	P13612	1032 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	PSMC2	P35998	433 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	GRM5	P41594	1212 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	MAGEA10	P43363	369 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ACOT2	P49753	483 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	MLLT1	Q03111	559 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	SNRNP35	Q16560	246 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	UBXN11	Q5T124	520 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	SPATA1	Q5VX52	437 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ZNF365	Q70YC5	407 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ECHDC2	Q86YB7	292 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ABI1	Q8IZP0	508 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	AOPEP	Q8N6M6	819 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ENOX1	Q8TC92	643 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	CEP63	Q96MT8	703 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	ACAP3	Q96P50	834 aa		13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	NXF3	Q9H4D5	531 aa	Known RBP	13.63	□□□□□ -0.23
ABCD4-223	ENST00000555904	RPF1	Q9H9Y2	349 aa	Known RBP	13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms