RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 EPB41L4BQ9H329 900 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 PPANQ9NQ55 473 aaKnown RBP14.51□□□□□ -0.09
SHMT2-222ENST00000555774 GRHL1Q9NZI5 618 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 PGAP2Q9UHJ9 254 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 TCEAL9Q9UHQ7 104 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 TRPC6Q9Y210 931 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 PCDHA3Q9Y5H8 950 aa14.51□□□□□ -0.09
SHMT2-222ENST00000555774 BACH1O14867 736 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SLC16A4O15374 487 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 ADRB2P07550 413 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 PEX3P56589 373 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 FMO1Q01740 532 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 CDR2Q01850 454 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 MESDQ14696 234 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SLMAPQ14BN4 828 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SNRNP35Q16560 246 aaKnown RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 MMS22LQ6ZRQ5 1243 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SUGP1Q8IWZ8 645 aaKnown RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 CNPY4Q8N129 248 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 AGBL3Q8NEM8 1001 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SPIRE2Q8WWL2 714 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 C18orf8Q96DM3 657 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 C17orf75Q9HAS0 396 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 TBX20Q9UMR3 447 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SNX24Q9Y343 169 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 USP8P40818 1118 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 PDE6CP51160 858 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 PLTPP55058 493 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 XRRA1Q6P2D8 792 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SAMD1Q6SPF0 538 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 ENOSF1Q7L5Y1 443 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 ADAT2Q7Z6V5 191 aaKnown RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SLC13A5Q86YT5 568 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 PPM1KQ8N3J5 372 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 NT5C1BQ96P26 610 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 PLVAPQ9BX97 442 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 ZNF341Q9BYN7 854 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 SLC38A10Q9HBR0 1119 aa14.5□□□□□ -0.09
SHMT2-222ENST00000555774 CNOT8Q9UFF9 292 aaKnown RBP14.5□□□□□ -0.09
SHMT2-222ENST00000555774 TMEM110-MUSTN1A8MSY1 372 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 C21orf2O43822 256 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 CYP11B1P15538 503 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 COPB2P35606 906 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 RWDD2BP57060 319 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ADCY2Q08462 1091 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 PGM5Q15124 567 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 CCDC137Q6PK04 289 aaKnown RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 MIGA2Q7L4E1 593 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 TMEM161BQ8NDZ6 487 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 HELQQ8TDG4 1101 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 PARD3BQ8TEW8 1205 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 RAPGEF5Q92565 580 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 P3H4Q92791 437 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 KAT5Q92993 513 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 FBXL18Q96ME1 805 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 NUP85Q9BW27 656 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 KIAA1683Q9H0B3 1180 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 STMN4Q9H169 189 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ACTR5Q9H9F9 607 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 RGPD3A6NKT7 1758 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 RGPD4Q7Z3J3 1758 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 PASKQ96RG2 1323 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 CYP26A1O43174 497 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 SPOPO43791 374 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ZC3H11AO75152 810 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 RAD17O75943 681 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 COILP38432 576 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 MARCKSL1P49006 195 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 MAP2K1Q02750 393 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 SPP2Q13103 211 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 DMP1Q13316 513 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 C6orf118Q5T5N4 469 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 FAM102BQ5T8I3 360 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ZNF746Q6NUN9 644 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 AEBP2Q6ZN18 517 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 LARGE2Q8N3Y3 721 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 FBXL13Q8NEE6 735 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 FBXO25Q8TCJ0 367 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 SLCO2A1Q92959 643 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ZNF653Q96CK0 615 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 ZBED3Q96IU2 234 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-222ENST00000555774 MFSD14AQ96MC6 490 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 SENP7Q9BQF6 1050 aa14.49□□□□□ -0.09
SHMT2-222ENST00000555774 DKC1O60832 514 aaKnown RBP eCLIP14.48□□□□□ -0.09
SHMT2-222ENST00000555774 AGTP01019 485 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 FDX1P10109 184 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 TMOD1P28289 359 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ADSSP30520 456 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ABCD1P33897 745 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 RPL21P46778 160 aaKnown RBP14.48□□□□□ -0.09
SHMT2-222ENST00000555774 UGCGQ16739 394 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 XKR9Q5GH70 373 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 ACAD10Q6JQN1 1059 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 TTC27Q6P3X3 843 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 SLC47A2Q86VL8 602 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 CBWD2Q8IUF1 395 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 MAIP1Q8WWC4 291 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 SEMA4DQ92854 862 aa14.48□□□□□ -0.09
SHMT2-222ENST00000555774 NTPCRQ9BSD7 190 aaKnown RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms