RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NTRK3Q16288 839 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 FUT10Q6P4F1 479 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 FERMT3Q86UX7 667 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 SMG8Q8ND04 991 aaKnown RBP18.85■□□□□ 0.61
VPS29-204ENST00000548259 MBOAT7Q96N66 472 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 FOXQ1Q9C009 403 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 CSRNP2Q9H175 543 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 MINDY3Q9H8M7 445 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 ADAM28Q9UKQ2 775 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 CDH7Q9ULB5 785 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 SF3B1O75533 1304 aaKnown RBP eCLIP18.84■□□□□ 0.61
VPS29-204ENST00000548259 INO80B-WBP1J3KQ70 363 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 CPLX1O14810 134 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 XYLBO75191 536 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 HNRNPA1P09651 372 aaKnown RBP eCLIP18.84■□□□□ 0.61
VPS29-204ENST00000548259 PSMA5P28066 241 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 EMC2Q15006 297 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 CPLX2Q6PUV4 134 aaKnown RBP18.84■□□□□ 0.61
VPS29-204ENST00000548259 KRT25Q7Z3Z0 450 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 MTRQ99707 1265 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 APOL6Q9BWW8 343 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 OSBPL6Q9BZF3 934 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 PCDHGA2Q9Y5H1 932 aa18.84■□□□□ 0.61
VPS29-204ENST00000548259 NCOR2Q9Y618 2525 aa18.83■□□□□ 0.61
VPS29-204ENST00000548259 NCAM2O15394 837 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 DEXIO95424 95 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 EFEMP2O95967 443 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 CPA1P15085 419 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 GCFC2P16383 781 aaKnown RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 YWHABP31946 246 aaKnown RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 POU5F1BQ06416 359 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 UBXN2BQ14CS0 331 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 RSPO4Q2I0M5 234 aaPredicted RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 XKR9Q5GH70 373 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 VARS2Q5ST30 1063 aaKnown RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 LILRA6Q6PI73 481 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 RSPO2Q6UXX9 243 aaPredicted RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 GLYCTKQ8IVS8 523 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 C4orf19Q8IY42 314 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 DCLK2Q8N568 766 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 ZFP42Q96MM3 310 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 NAP1L4Q99733 375 aaKnown RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 EIF2AQ9BY44 585 aaKnown RBP18.83■□□□□ 0.6
VPS29-204ENST00000548259 ZSWIM4Q9H7M6 989 aa18.83■□□□□ 0.6
VPS29-204ENST00000548259 FRYLO94915 3013 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 PRR5-ARHGAP8B1AHC4 643 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 TSPAN1O60635 241 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 CDC45O75419 566 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 RPS6KB1P23443 525 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 PTENP60484 403 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 GPC5P78333 572 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 CCT2P78371 535 aaKnown RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 ARHGAP8P85298 464 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 GRIK3Q13003 919 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 SNW1Q13573 536 aaKnown RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 MLF2Q15773 248 aaPredicted RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 PPM1LQ5SGD2 360 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 PDXDC1Q6P996 788 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 GRASPQ7Z6J2 395 aaPredicted RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 SUMF1Q8NBK3 374 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 DAGLBQ8NCG7 672 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 CCDC43Q96MW1 224 aaKnown RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 NELL2Q99435 816 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 LXNQ9BS40 222 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 GPR62Q9BZJ7 368 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 BMP2KQ9NSY1 1161 aaPredicted RBP18.82■□□□□ 0.6
VPS29-204ENST00000548259 HES2Q9Y543 173 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 OTOGLQ3ZCN5 2332 aa18.82■□□□□ 0.6
VPS29-204ENST00000548259 ZMYM2Q9UBW7 1377 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 CEP250Q9BV73 2442 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 C2orf16Q68DN1 1984 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 CCDC194A0A1B0GVG4 234 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 EML1O00423 815 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 PDIA3P30101 505 aaKnown RBP18.81■□□□□ 0.6
VPS29-204ENST00000548259 HOXA9P31269 272 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 LMNB2Q03252 620 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 CSTF1Q05048 431 aaKnown RBP18.81■□□□□ 0.6
VPS29-204ENST00000548259 EPHA7Q15375 998 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 INF2Q27J81 1249 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 SLC44A4Q53GD3 710 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 CPB2Q96IY4 423 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 B3GALT6Q96L58 329 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 AGXT2Q9BYV1 514 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 RNF39Q9H2S5 420 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 POLIQ9UNA4 740 aa18.81■□□□□ 0.6
VPS29-204ENST00000548259 FAM170BA6NMN3 283 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 TBX3O15119 743 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 GLULP15104 373 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 ELAVL2Q12926 359 aaKnown RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 HSP90AA2PQ14568 343 aaPredicted RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 ZBTB41Q5SVQ8 909 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 PPP4R3AQ6IN85 833 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 PARM1Q6UWI2 310 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 ZNF579Q8NAF0 562 aaKnown RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 FGF14Q92915 247 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 TTPALQ9BTX7 342 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 NCOA5Q9HCD5 579 aaKnown RBP18.8■□□□□ 0.6
VPS29-204ENST00000548259 MIOSQ9NXC5 875 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 PARP2Q9UGN5 583 aa18.8■□□□□ 0.6
VPS29-204ENST00000548259 FBXW11Q9UKB1 542 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms