RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF480Q8WV37 535 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 ZBTB8AQ96BR9 441 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 SLC35A4Q96G79 324 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 PTPN18Q99952 460 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 PDCD2LQ9BRP1 358 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 MANSC1Q9H8J5 431 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 KCNK12Q9HB15 430 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 TLR9Q9NR96 1032 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 PCDHA3Q9Y5H8 950 aa9.14□□□□□ -0.95
NUP54-215ENST00000514313 MYF5P13349 255 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 TOP3AQ13472 1001 aaPredicted RBP9.13□□□□□ -0.95
NUP54-215ENST00000514313 KHDC1Q4VXA5 237 aaKnown RBP9.13□□□□□ -0.95
NUP54-215ENST00000514313 TAS1R1Q7RTX1 841 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 HEATR3Q7Z4Q2 680 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 CCHCR1Q8TD31 782 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 FAM168AQ92567 244 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 EVI5LQ96CN4 794 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 TMX3Q96JJ7 454 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 UIMC1Q96RL1 719 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 VRK1Q99986 396 aaPredicted RBP9.13□□□□□ -0.95
NUP54-215ENST00000514313 EPB41L4BQ9H329 900 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 NSUN3Q9H649 340 aaKnown RBP9.13□□□□□ -0.95
NUP54-215ENST00000514313 CORO2BQ9UQ03 480 aa9.13□□□□□ -0.95
NUP54-215ENST00000514313 H3BUI4 141 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 FRS3O43559 492 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 HMGCRP04035 888 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 FGL2Q14314 439 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 PLS1Q14651 629 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 INO80DQ53TQ3 878 aaPredicted RBP9.12□□□□□ -0.95
NUP54-215ENST00000514313 C19orf54Q5BKX5 351 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 RSPH3Q86UC2 560 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 ACRBPQ8NEB7 543 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 RIPOR3Q96MK2 946 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 SGPP1Q9BX95 441 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 BTBD1Q9H0C5 482 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 DCP1AQ9NPI6 582 aaPredicted RBP9.12□□□□□ -0.95
NUP54-215ENST00000514313 ABCF2Q9UG63 623 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 TRPS1Q9UHF7 1281 aa9.12□□□□□ -0.95
NUP54-215ENST00000514313 TEX51A0A1B0GUA7 166 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 RHPN2P1A8MT19 583 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 KPNA5O15131 536 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 PHGDHO43175 533 aaKnown RBP9.11□□□□□ -0.95
NUP54-215ENST00000514313 CYP7B1O75881 506 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 TYRP14679 529 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 POLD1P28340 1107 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 SREBF1P36956 1147 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 ETV4P43268 484 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 CASP5P51878 434 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 PER3P56645 1201 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 TLE1Q04724 770 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 PRR23BQ6ZRT6 265 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 PQLC1Q8N2U9 271 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 ZGPATQ8N5A5 531 aaKnown RBP9.11□□□□□ -0.95
NUP54-215ENST00000514313 SH2D3CQ8N5H7 860 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 IFI44Q8TCB0 444 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 PHKBQ93100 1093 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 MTFMTQ96DP5 389 aaKnown RBP9.11□□□□□ -0.95
NUP54-215ENST00000514313 APIPQ96GX9 242 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 UHRF1Q96T88 793 aaPredicted RBP9.11□□□□□ -0.95
NUP54-215ENST00000514313 LRRC27Q9C0I9 530 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 LDAHQ9H6V9 325 aa9.11□□□□□ -0.95
NUP54-215ENST00000514313 EPB41L4AQ9HCS5 686 aaPredicted RBP9.11□□□□□ -0.95
NUP54-215ENST00000514313 KLRG2A4D1S0 409 aaPredicted RBP9.1□□□□□ -0.95
NUP54-215ENST00000514313 F5H423 210 aaPredicted RBP9.1□□□□□ -0.95
NUP54-215ENST00000514313 ADCY6O43306 1168 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 KLHL18O94889 574 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 PLA2G1BP04054 148 aaKnown RBP9.1□□□□□ -0.95
NUP54-215ENST00000514313 AMY1AP04745 511 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 RAB39AQ14964 217 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 PRR31Q5SQ13 230 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 LARP4Q71RC2 724 aaKnown RBP eCLIP9.1□□□□□ -0.95
NUP54-215ENST00000514313 CLEC14AQ86T13 490 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 OR2C3Q8N628 320 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 LILRA3Q8N6C8 439 aaPredicted RBP9.1□□□□□ -0.95
NUP54-215ENST00000514313 OR7D4Q8NG98 312 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 IL31RAQ8NI17 732 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 DEPTORQ8TB45 409 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 FAM167AQ96KS9 214 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 C14orf93Q9H972 538 aaKnown RBP9.1□□□□□ -0.95
NUP54-215ENST00000514313 BCO1Q9HAY6 547 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 PNPOQ9NVS9 261 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 TPCN1Q9ULQ1 816 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 VWA7Q9Y334 891 aa9.1□□□□□ -0.95
NUP54-215ENST00000514313 MYBBP1AQ9BQG0 1328 aaKnown RBP9.09□□□□□ -0.95
NUP54-215ENST00000514313 SCO2A0A1W2PP80 73 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 DAPK3O43293 454 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 ALDH1A2O94788 518 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 ZNF28P17035 718 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 ADAM15Q13444 863 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 SNAPC2Q13487 334 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 ANO1Q5XXA6 986 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 TRIM68Q6AZZ1 485 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 TMEM132EQ6IEE7 984 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 GADL1Q6ZQY3 521 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 RTKN2Q8IZC4 609 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 CELF5Q8N6W0 485 aaKnown RBP9.09□□□□□ -0.95
NUP54-215ENST00000514313 NUDT10Q8NFP7 164 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 POF1BQ8WVV4 589 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 ANKS1AQ92625 1134 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 GFM2Q969S9 779 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms