RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SNX1Q13596 522 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 MFSD10Q14728 455 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 ATP8B4Q8TF62 1192 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 PSPC1Q8WXF1 523 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 ELMO3Q96BJ8 720 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 FAM167BQ9BTA0 163 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 KIF9Q9HAQ2 790 aa9.4□□□□□ -0.9
LIMCH1-209ENST00000509277 SMIM23A6NLE4 172 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 E7EVH7 732 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 K7ERI5 159 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 CAND2O75155 1236 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 IPO7O95373 1038 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 NR2F2P24468 414 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 TMOD1P28289 359 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 CDC25BP30305 580 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 LIG4P49917 911 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 GUCY2FP51841 1108 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 AP1ARQ63HQ0 302 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 CCDC70Q6NSX1 233 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 MAMDC4Q6UXC1 1216 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 PPTC7Q8NI37 304 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 ASAP3Q8TDY4 903 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 POMGNT1Q8WZA1 660 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 P2RX5Q93086 422 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 ZCWPW1Q9H0M4 648 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 MAGEF1Q9HAY2 307 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 IMPACTQ9P2X3 320 aa9.4□□□□□ -0.91
LIMCH1-209ENST00000509277 MYO9BQ13459 2157 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 A0A087WZ62 844 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 PPP1R3GB7ZBB8 358 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SEPT4O43236 478 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 TREHO43280 583 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 HBP1O60381 514 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 RHOBTB3O94955 611 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 NPTX2P47972 431 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 ADAM9Q13443 819 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 NBPF20Q3BBV1 942 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 LMBRD2Q68DH5 695 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 TRIM68Q6AZZ1 485 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 THNSL1Q8IYQ7 743 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 RETREG2Q8NC44 543 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 OSMRQ99650 979 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 FDXACB1Q9BRP7 624 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SENP6Q9GZR1 1112 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 CLTAP09496 248 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SMIM10L2AP0DMW4 78 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SMIM10L2BP0DMW5 78 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 DLATP10515 647 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 PSEN2P49810 448 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 STXBP4Q6ZWJ1 553 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 ZNF467Q7Z7K2 595 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 RNF180Q86T96 592 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 EGFL6Q8IUX8 553 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 REM2Q8IYK8 340 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 DAW1Q8N136 415 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 MCPH1Q8NEM0 835 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 FAM167AQ96KS9 214 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 TARS2Q9BW92 718 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 XPNPEP1Q9NQW7 623 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 A0A1B0GUA9 196 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 PQBP1O60828 265 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 HOXC6P09630 235 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SARSP49591 514 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 GUCY1A3Q02108 690 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SPAG1Q07617 926 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SARM1Q6SZW1 724 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SCFD1Q8WVM8 642 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 LMBR1Q8WVP7 490 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 TCP11Q8WWU5 503 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 ZBTB45Q96K62 511 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 GLT1D1Q96MS3 346 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 KATNBL1Q9H079 304 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 CCDC113Q9H0I3 377 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 ANKEF1Q9NU02 776 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 SMARCAL1Q9NZC9 954 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 CDC23Q9UJX2 597 aa9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 MAFBQ9Y5Q3 323 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-209ENST00000509277 PVALEFA0A1B0GWK0 134 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 CYBAP13498 195 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 HLTFQ14527 1009 aaKnown RBP eCLIP9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 B3GNT9Q6UX72 402 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 ADSSL1Q8N142 457 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 RDM1Q8NG50 284 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 CPB2Q96IY4 423 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 SEMA6BQ9H3T3 888 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 ANKZF1Q9H8Y5 726 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 PLXNA1Q9UIW2 1896 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 BUB1BO60566 1050 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 DUSP11O75319 330 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 PLS3P13797 630 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 CASP4P49662 377 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 ACOT2P49753 483 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 C2orf54Q08AI8 447 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 MKRN4PQ13434 485 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 HYIQ5T013 277 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 NFRKBQ6P4R8 1299 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 RBM43Q6ZSC3 357 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 CCDC121Q6ZUS5 278 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 TRIML1Q8N9V2 468 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 CNOT6LQ96LI5 555 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms