RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 KRT18P05783 430 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 LTBRP36941 435 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 SCNN1GP51170 649 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 AFF1P51825 1210 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 SLC12A3P55017 1021 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 STRN3Q13033 797 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 GIT2Q14161 759 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 KARSQ15046 597 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 DUSP6Q16828 381 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 DCAF4L1Q3SXM0 396 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 TMEM119Q4V9L6 283 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 ATF7IP2Q5U623 682 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 MRPL4Q9BYD3 311 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 SNTG2Q9NY99 539 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 KLK14Q9P0G3 267 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 LARSQ9P2J5 1176 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 CD207Q9UJ71 328 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 SRPRBQ9Y5M8 271 aaKnown RBP12.33□□□□□ -0.44
RFFL-204ENST00000414419 ZMYM2Q9UBW7 1377 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 TTLL13PA6NNM8 815 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 HIDE1A8MVS5 230 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 H0YCG3 227 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 INPPL1O15357 1258 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 SLC16A4O15374 487 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 TBX10O75333 385 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 PLS3P13797 630 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 IL9P15248 144 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 PLCG1P19174 1290 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 GRIN1Q05586 938 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 DLX2Q07687 328 aaPredicted RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 GRIK3Q13003 919 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 STK38Q15208 465 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 PTPAQ15257 358 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 NT5DC1Q5TFE4 455 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 GPBP1Q86WP2 473 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 TMEM173Q86WV6 379 aaPredicted RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 COLGALT2Q8IYK4 626 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 DAW1Q8N136 415 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 MRPL43Q8N983 215 aaKnown RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 ZNF396Q96N95 335 aaPredicted RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 NECAB3Q96P71 396 aaPredicted RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 TCHPQ9BT92 498 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 COLEC11Q9BWP8 271 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 CCSER1Q9C0I3 900 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 MIOSQ9NXC5 875 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 USP20Q9Y2K6 914 aa12.32□□□□□ -0.44
RFFL-204ENST00000414419 PRG3Q9Y2Y8 225 aaPredicted RBP12.32□□□□□ -0.44
RFFL-204ENST00000414419 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 C2orf71A6NGG8 1288 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 FAM13AO94988 1023 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 CTSAP10619 480 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SSTR3P32745 418 aaPredicted RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 DDIT3P35638 169 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 CACNB1Q02641 598 aaPredicted RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 MAPK7Q13164 816 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SMAD4Q13485 552 aaKnown RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 MCM6Q14566 821 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SLC39A14Q15043 492 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SPECC1Q5M775 1068 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 RRAGBQ5VZM2 374 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 EEF1DP3Q658K8 133 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 LLGL2Q6P1M3 1020 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 MYCT1Q8N699 235 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 KRI1Q8N9T8 703 aaKnown RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 SPRYD3Q8NCJ5 442 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SPIRE2Q8WWL2 714 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 LARP4BQ92615 738 aaKnown RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 RAD54LQ92698 747 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 EPSTI1Q96J88 318 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 CLIC6Q96NY7 704 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 USP28Q96RU2 1077 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 ACO2Q99798 780 aaKnown RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 NTPCRQ9BSD7 190 aaKnown RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 ZBP1Q9H171 429 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 ZHX3Q9H4I2 956 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 ARHGAP28Q9P2N2 729 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 FBXO2Q9UK22 296 aaPredicted RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 ODF2LQ9ULJ1 636 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 BARX2Q9UMQ3 279 aaPredicted RBP12.31□□□□□ -0.44
RFFL-204ENST00000414419 TNFSF13BQ9Y275 285 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 SSX2IPQ9Y2D8 614 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 GDAQ9Y2T3 454 aa12.31□□□□□ -0.44
RFFL-204ENST00000414419 NPHP3-ACAD11A0A0J9YXS1 232 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 MBTPS2O43462 519 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 B4GALT3O60512 393 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 TBCAO75347 108 aaKnown RBP12.3□□□□□ -0.44
RFFL-204ENST00000414419 RECQL4O94761 1208 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 EDN1P05305 212 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 THP07101 528 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 MATR3P43243 847 aaKnown RBP eCLIP12.3□□□□□ -0.443e-6■■■□□ 15.2
RFFL-204ENST00000414419 YARSP54577 528 aaKnown RBP12.3□□□□□ -0.44
RFFL-204ENST00000414419 DSC1Q08554 894 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 ZNF568Q3ZCX4 644 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 ARSHQ5FYA8 562 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 FOXD4L5Q5VV16 416 aaPredicted RBP12.3□□□□□ -0.44
RFFL-204ENST00000414419 KIAA1841Q6NSI8 718 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 ZBTB33Q86T24 672 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 FAM178BQ8IXR5 827 aa12.3□□□□□ -0.44
RFFL-204ENST00000414419 BCL7CQ8WUZ0 217 aaPredicted RBP12.3□□□□□ -0.44
RFFL-204ENST00000414419 FOXD4L4Q8WXT5 416 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms