RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NPTXRO95502 500 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 POU3F3P20264 500 aaPredicted RBP14.29□□□□□ -0.12
CLK3-224ENST00000568605 PPM1AP35813 382 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 BMPR1AP36894 532 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 RNASELQ05823 741 aaKnown RBP14.29□□□□□ -0.12
CLK3-224ENST00000568605 GPM6BQ13491 265 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 TIGD5Q53EQ6 642 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 UBXN11Q5T124 520 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 SPRED2Q7Z698 418 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 FAM178BQ8IXR5 827 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 PDILTQ8N807 584 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 IQUBQ8NA54 791 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 LPPQ93052 612 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 CASD1Q96PB1 797 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 TNMDQ9H2S6 317 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 ZHX3Q9H4I2 956 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 POLD4Q9HCU8 107 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 KANSL3Q9P2N6 904 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 RCOR1Q9UKL0 485 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 PCDHA7Q9UN72 937 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 INPP5FQ9Y2H2 1132 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 ZDHHC9Q9Y397 364 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 K7ENM7 598 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 SLC16A4O15374 487 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 GAP43P17677 238 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 ZNF131P52739 623 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 NCKAP1LP55160 1127 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 AMPD3Q01432 767 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 CACNB1Q02641 598 aaPredicted RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 ARSHQ5FYA8 562 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 NOMO2Q5JPE7 1267 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 ATF7IP2Q5U623 682 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 MRPL10Q7Z7H8 261 aaKnown RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 THNSL1Q8IYQ7 743 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 MICALL1Q8N3F8 863 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 MYCT1Q8N699 235 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 LRRC15Q8TF66 581 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 LEO1Q8WVC0 666 aaPredicted RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 ZNF558Q96NG5 402 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 FAM193BQ96PV7 902 aaPredicted RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 RPS6KC1Q96S38 1066 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 NTPCRQ9BSD7 190 aaKnown RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 EIF2AQ9BY44 585 aaKnown RBP14.28□□□□□ -0.12
CLK3-224ENST00000568605 PDZD7Q9H5P4 517 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 RNF19AQ9NV58 838 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 SEL1LQ9UBV2 794 aa14.28□□□□□ -0.12
CLK3-224ENST00000568605 MYO7AQ13402 2215 aa14.27□□□□□ -0.12
CLK3-224ENST00000568605 NPHP3-ACAD11A0A0J9YXS1 232 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 SFI1A8K8P3 1242 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 RFXAPO00287 272 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 TRAK2O60296 914 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 LINC00271P0C7V0 271 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 UBE3AQ05086 875 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 GIT2Q14161 759 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 ADGRE1Q14246 886 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 ZNF568Q3ZCX4 644 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 LONRF3Q496Y0 759 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 AXDND1Q5T1B0 1012 aaPredicted RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 RESP18Q5W5W9 173 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 SHC4Q6S5L8 630 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 AGMOQ6ZNB7 445 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 DYMQ7RTS9 669 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 COLGALT1Q8NBJ5 622 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 SMG8Q8ND04 991 aaKnown RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 TMEM161BQ8NDZ6 487 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 DDX12PQ92771 950 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 KCNN1Q92952 543 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 DHX58Q96C10 678 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 MRPL38Q96DV4 380 aaKnown RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 BICD1Q96G01 975 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 APOL6Q9BWW8 343 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 NXF3Q9H4D5 531 aaKnown RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 TYW1Q9NV66 732 aaKnown RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 TBC1D13Q9NVG8 400 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 CIZ1Q9ULV3 898 aaPredicted RBP14.27□□□□□ -0.13
CLK3-224ENST00000568605 GIT1Q9Y2X7 761 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 MTCH2Q9Y6C9 303 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 BRWD1Q9NSI6 2320 aa14.27□□□□□ -0.13
CLK3-224ENST00000568605 MTCL1Q9Y4B5 1905 aaKnown RBP14.26□□□□□ -0.13
CLK3-224ENST00000568605 A0A087X0B3 334 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 LPXNO60711 386 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 ZC3H11AO75152 810 aaKnown RBP eCLIP14.26□□□□□ -0.13
CLK3-224ENST00000568605 MAPTP10636 758 aaKnown RBP14.26□□□□□ -0.13
CLK3-224ENST00000568605 ALDH7A1P49419 539 aaKnown RBP14.26□□□□□ -0.13
CLK3-224ENST00000568605 ADALQ6DHV7 355 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 ZPBP2Q6X784 338 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 HAUS6Q7Z4H7 955 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 CDR2LQ86X02 465 aaPredicted RBP14.26□□□□□ -0.13
CLK3-224ENST00000568605 CEP57L1Q8IYX8 460 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 PPP2R3CQ969Q6 453 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 HVCN1Q96D96 273 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 PANK2Q9BZ23 570 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 CWH43Q9H720 699 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 TNFSF13BQ9Y275 285 aa14.26□□□□□ -0.13
CLK3-224ENST00000568605 MEIS3P2A8K0S8 358 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 HNRNPDLO14979 420 aaKnown RBP14.25□□□□□ -0.13
CLK3-224ENST00000568605 INPPL1O15357 1258 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 POLR2DO15514 142 aaKnown RBP14.25□□□□□ -0.13
CLK3-224ENST00000568605 OFD1O75665 1012 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 IDEP14735 1019 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms