RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 EPM2AIP1Q7L775 607 aaPredicted RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 CDR2LQ86X02 465 aaPredicted RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 ECHDC2Q86YB7 292 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 NPAS4Q8IUM7 802 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 CRIPAKQ8N1N5 446 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 SPATA20Q8TB22 786 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 GPT2Q8TD30 523 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 CCDC47Q96A33 483 aaKnown RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 ACO2Q99798 780 aaKnown RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 EIF2AQ9BY44 585 aaKnown RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 UBE4BO95155 1302 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 ATF7P17544 494 aaPredicted RBP23.79■■□□□ 1.4
SNX1-206ENST00000559389 PROZP22891 400 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 FAM109BQ6ICB4 259 aaPredicted RBP23.79■■□□□ 1.4
SNX1-206ENST00000559389 STXBP4Q6ZWJ1 553 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 TMCO2Q7Z6W1 182 aaPredicted RBP23.79■■□□□ 1.4
SNX1-206ENST00000559389 HERC6Q8IVU3 1022 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 KIAA0895Q8NCT3 520 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 TOP1MTQ969P6 601 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 ELAC1Q9H777 363 aaKnown RBP23.79■■□□□ 1.4
SNX1-206ENST00000559389 TMEM161AQ9NX61 479 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 PCDHB13Q9Y5F0 798 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 PCDHA5Q9Y5H7 936 aa23.79■■□□□ 1.4
SNX1-206ENST00000559389 ABLIM1O14639 778 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 SMC2O95347 1197 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 MBD3O95983 291 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 SKIP12755 728 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 PSMD2Q13200 908 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 ZNF598Q86UK7 904 aaKnown RBP23.78■■□□□ 1.4
SNX1-206ENST00000559389 ERCC4Q92889 916 aaPredicted RBP23.78■■□□□ 1.4
SNX1-206ENST00000559389 BICD1Q96G01 975 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 GSDMAQ96QA5 445 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 ADPGKQ9BRR6 497 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 CLSTN2Q9H4D0 955 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 PTPRHQ9HD43 1115 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 SLC39A2Q9NP94 309 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 PCDHB2Q9Y5E7 798 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 ZMYM2Q9UBW7 1377 aa23.78■■□□□ 1.4
SNX1-206ENST00000559389 HNRNPDLO14979 420 aaKnown RBP23.77■■□□□ 1.4
SNX1-206ENST00000559389 ZNF623O75123 536 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 TOM1L1O75674 476 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 GJB5O95377 273 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 NPTXRO95502 500 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 STAG3L1P0CL83 205 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 LIG4P49917 911 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 KCNA1Q09470 495 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 STK4Q13043 487 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 BMT2Q1RMZ1 405 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 DCAF4L1Q3SXM0 396 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 ZNF568Q3ZCX4 644 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 SLC39A4Q6P5W5 647 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 SMARCE1Q969G3 411 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 ACCSQ96QU6 501 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 CDT1Q9H211 546 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 RNF216Q9NWF9 866 aaPredicted RBP23.77■■□□□ 1.4
SNX1-206ENST00000559389 RMND1Q9NWS8 449 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 EXOC7Q9UPT5 735 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 GBF1Q92538 1859 aa23.77■■□□□ 1.4
SNX1-206ENST00000559389 PRPF6O94906 941 aaKnown RBP23.76■■□□□ 1.39
SNX1-206ENST00000559389 MPZL3Q6UWV2 235 aa23.76■■□□□ 1.39
SNX1-206ENST00000559389 SMG8Q8ND04 991 aaKnown RBP23.76■■□□□ 1.39
SNX1-206ENST00000559389 SCFD1Q8WVM8 642 aa23.76■■□□□ 1.39
SNX1-206ENST00000559389 ANKFY1Q9P2R3 1169 aa23.76■■□□□ 1.39
SNX1-206ENST00000559389 IPPQ9Y573 584 aa23.76■■□□□ 1.39
SNX1-206ENST00000559389 IBSPP21815 317 aaPredicted RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 HOXD13P35453 343 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 LRIT3Q3SXY7 679 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 APBB1IPQ7Z5R6 666 aaPredicted RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 MRPL10Q7Z7H8 261 aaKnown RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 ZNF507Q8TCN5 953 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 TRIM6Q9C030 488 aaPredicted RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 NUP62CLQ9H1M0 184 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 IKZF4Q9H2S9 585 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 NXF3Q9H4D5 531 aaKnown RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 TMEM206Q9H813 350 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 RC3H2Q9HBD1 1191 aaKnown RBP23.75■■□□□ 1.39
SNX1-206ENST00000559389 RNF19AQ9NV58 838 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 LRFN2Q9ULH4 789 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 GDAQ9Y2T3 454 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 PCDHB7Q9Y5E2 793 aa23.75■■□□□ 1.39
SNX1-206ENST00000559389 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.74■■□□□ 1.39
SNX1-206ENST00000559389 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.74■■□□□ 1.39
SNX1-206ENST00000559389 GRXCR1A8MXD5 290 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 DGKIO75912 1065 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 UPP2O95045 317 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 EOMESO95936 686 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 MCF2P10911 925 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 HTRA4P83105 476 aaPredicted RBP23.74■■□□□ 1.39
SNX1-206ENST00000559389 MCL1Q07820 350 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 NOLC1Q14978 699 aaKnown RBP eCLIP23.74■■□□□ 1.39
SNX1-206ENST00000559389 CAMK4Q16566 473 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 FAM117BQ6P1L5 589 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 ZBTB45Q96K62 511 aaPredicted RBP23.74■■□□□ 1.39
SNX1-206ENST00000559389 HES2Q9Y543 173 aa23.74■■□□□ 1.39
SNX1-206ENST00000559389 MEIS3P2A8K0S8 358 aa23.73■■□□□ 1.39
SNX1-206ENST00000559389 TISP43B9A030 160 aa23.73■■□□□ 1.39
SNX1-206ENST00000559389 FGFR1P11362 822 aa23.73■■□□□ 1.39
SNX1-206ENST00000559389 RNF169Q8NCN4 708 aa23.73■■□□□ 1.39
SNX1-206ENST00000559389 LPPQ93052 612 aa23.73■■□□□ 1.39
SNX1-206ENST00000559389 PGBD4Q96DM1 585 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms