RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PDLIM2Q96JY6 352 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 LGR6Q9HBX8 967 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CES2O00748 559 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 GH1P01241 217 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CHGBP05060 677 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 DDIT3P35638 169 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SERPINB10P48595 397 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CLCN6P51797 869 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 PMS2P54278 862 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 MAP3K10Q02779 954 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 XRRA1Q6P2D8 792 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 DARS2Q6PI48 645 aaKnown RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 GLB1LQ6UWU2 654 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SKAP1Q86WV1 359 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 AGGF1Q8N302 714 aaeCLIP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 IL17REQ8NFR9 667 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 TRIM63Q969Q1 353 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 STAMBPL1Q96FJ0 436 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 NUDCD1Q96RS6 583 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 GLIS2Q9BZE0 524 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 FAM49AQ9H0Q0 323 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 MROH8Q9H579 483 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SLC38A10Q9HBR0 1119 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SMARCAL1Q9NZC9 954 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CAPN11Q9UMQ6 739 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 INPP5FQ9Y2H2 1132 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SLIT3O75094 1523 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CFAP69A5D8W1 941 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 NEMP1O14524 444 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 KPNA1P52294 538 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 ABCE1P61221 599 aaKnown RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 OCA2Q04671 838 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 IKBKEQ14164 716 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 TMED2Q15363 201 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 LRRC23Q53EV4 343 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 HHIPL2Q6UWX4 724 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 RYBPQ8N488 228 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SRPK1Q96SB4 655 aaKnown RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 CPSF3Q9UKF6 684 aaKnown RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 PYCARDQ9ULZ3 195 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 HEMK1Q9Y5R4 338 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 PITPNM2Q9BZ72 1349 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 TMEM247A6NEH6 219 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 ALDH1A2O94788 518 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 FOSL2P15408 326 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 CREMQ03060 361 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 RAD51Q06609 339 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 C2orf54Q08AI8 447 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 ART3Q13508 389 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 CYP4F22Q6NT55 531 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 C11orf57Q6ZUT1 292 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 WDR75Q8IWA0 830 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 RDM1Q8NG50 284 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 ATP6V1G3Q96LB4 118 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SIKE1Q9BRV8 207 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 DEFB129Q9H1M3 183 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 TAF1DQ9H5J8 278 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 MPP6Q9NZW5 540 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 STX18Q9P2W9 335 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 PIK3C2BO00750 1634 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF536O15090 1300 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 URODP06132 367 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 HSPA9P38646 679 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 C16orf89Q6UX73 402 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 CYFIP1Q7L576 1253 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SGMS1Q86VZ5 419 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SYT2Q8N9I0 419 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 MARCH10Q8NA82 808 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 COLEC11Q9BWP8 271 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 TRIM31Q9BZY9 425 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 WDR35Q9P2L0 1181 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 KIAA1024Q9UPX6 916 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 EXOC1LA0A1B0GW35 172 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 GSTA1P08263 222 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 GSTA2P09210 222 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 RCOR2Q8IZ40 523 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 DAGLBQ8NCG7 672 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 HDAC11Q96DB2 347 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SEPT3Q9UH03 358 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 PLAAQ9Y263 795 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 CEP170BQ9Y4F5 1589 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 PSMD14O00487 310 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 DYNC1LI2O43237 492 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 NCK2O43639 380 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 EIF4A3P38919 411 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 KRT31Q15323 416 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SNRNP48Q6IEG0 339 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 MTHFD1LQ6UB35 978 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 TOGARAM2Q6ZUX3 1019 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 DHX40Q8IX18 779 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 PDIK1LQ8N165 341 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 NSUN6Q8TEA1 469 aaKnown RBP8.3□□□□□ -1.08
VPS13D-211ENST00000543710 LPAR1Q92633 364 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 RIPOR3Q96MK2 946 aa8.3□□□□□ -1.08
VPS13D-211ENST00000543710 SSU72P8A0A1W2PR75 194 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 E9PMD0 336 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 STXBP3O00186 592 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 NKRFO15226 690 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PYGLP06737 847 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CCT5P48643 541 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms