RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PDZD7Q9H5P4 517 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 CHST12Q9NRB3 414 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 TMEM63CQ9P1W3 806 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 MAPK8IP1Q9UQF2 711 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 UBE4BO95155 1302 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 BAIAP3O94812 1187 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 HOXA11P31270 313 aaPredicted RBP16.4■□□□□ 0.22
NUP54-213ENST00000513352 SARSP49591 514 aaKnown RBP16.4■□□□□ 0.22
NUP54-213ENST00000513352 DSC3Q14574 896 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 ZNF658Q5TYW1 1059 aaPredicted RBP16.4■□□□□ 0.22
NUP54-213ENST00000513352 EEF1DP3Q658K8 133 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 SLC27A1Q6PCB7 646 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 APBB1IPQ7Z5R6 666 aaPredicted RBP16.4■□□□□ 0.22
NUP54-213ENST00000513352 SPATA20Q8TB22 786 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 LINC01599Q8WXQ3 324 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 CCDC51Q96ER9 411 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 RNPC3Q96LT9 517 aaKnown RBP16.4■□□□□ 0.22
NUP54-213ENST00000513352 GDF15Q99988 308 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 IKZF4Q9H2S9 585 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 TMEM206Q9H813 350 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 C1orf112Q9NSG2 853 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 LRFN2Q9ULH4 789 aa16.4■□□□□ 0.22
NUP54-213ENST00000513352 ENPP3O14638 875 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 KIF20AO95235 890 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 AMHP03971 560 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 WDR5P61964 334 aaKnown RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 STIM1Q13586 685 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 C9orf50Q5SZB4 431 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 MPZL3Q6UWV2 235 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 CHRDL2Q6WN34 429 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 ZPBP2Q6X784 338 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.39■□□□□ 0.21
NUP54-213ENST00000513352 EPM2AIP1Q7L775 607 aaPredicted RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 RTN4RL1Q86UN2 441 aaPredicted RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 NOC3LQ8WTT2 800 aaKnown RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 SCFD1Q8WVM8 642 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 HERVK_113Q902F9 699 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 ZBTB45Q96K62 511 aaPredicted RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 APOL6Q9BWW8 343 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 STRA6Q9BX79 667 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 EIF2AQ9BY44 585 aaKnown RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 GTPBP4Q9BZE4 634 aaKnown RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 TSPYL2Q9H2G4 693 aaPredicted RBP16.39■□□□□ 0.21
NUP54-213ENST00000513352 RGS18Q9NS28 235 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 TNFSF13BQ9Y275 285 aa16.39■□□□□ 0.21
NUP54-213ENST00000513352 A0A1B0GUA9 196 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 TISP43B9A030 160 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 ANKRD63C9JTQ0 380 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 TULP1O00294 542 aaPredicted RBP16.38■□□□□ 0.21
NUP54-213ENST00000513352 CLDN3O15551 220 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 TOM1L1O75674 476 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 UPP2O95045 317 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 RAB27AP51159 221 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 DEFB103AP81534 67 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 MORC3Q14149 939 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 NOLC1Q14978 699 aaKnown RBP eCLIP16.38■□□□□ 0.21
NUP54-213ENST00000513352 SHHQ15465 462 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 KNOP1Q1ED39 458 aaKnown RBP16.38■□□□□ 0.21
NUP54-213ENST00000513352 DCAF4L1Q3SXM0 396 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 FAM117BQ6P1L5 589 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 SLC24A5Q71RS6 500 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 TRIML1Q8N9V2 468 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 ZNF507Q8TCN5 953 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 POMGNT1Q8WZA1 660 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 CDT1Q9H211 546 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 FAM105AQ9NUU6 356 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 SLC4A7Q9Y6M7 1214 aa16.38■□□□□ 0.21
NUP54-213ENST00000513352 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.37■□□□□ 0.21
NUP54-213ENST00000513352 C9IYK1 514 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 PIGRP01833 764 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 SKIP12755 728 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 PRCPP42785 496 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 UBXN11Q5T124 520 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 KLHL10Q6JEL2 608 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 ARMCX5Q6P1M9 558 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 SASS6Q6UVJ0 657 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 HS2ST1Q7LGA3 356 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 ECHDC2Q86YB7 292 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 HACE1Q8IYU2 909 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 KCNN1Q92952 543 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 MSTO1Q9BUK6 570 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 GBP3Q9H0R5 595 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
NUP54-213ENST00000513352 CXXC1Q9P0U4 656 aaPredicted RBP16.37■□□□□ 0.21
NUP54-213ENST00000513352 PCDHB7Q9Y5E2 793 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 PCDHB2Q9Y5E7 798 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 ZMYM2Q9UBW7 1377 aa16.37■□□□□ 0.21
NUP54-213ENST00000513352 TTC3P53804 2025 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 MCF2P10911 925 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 OSTNP61366 133 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 BMT2Q1RMZ1 405 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 SLFN12LQ6IEE8 588 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 SLC39A4Q6P5W5 647 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 FAM43BQ6ZT52 329 aaPredicted RBP16.36■□□□□ 0.21
NUP54-213ENST00000513352 TMCO2Q7Z6W1 182 aaPredicted RBP16.36■□□□□ 0.21
NUP54-213ENST00000513352 NPAS4Q8IUM7 802 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 THNSL1Q8IYQ7 743 aa16.36■□□□□ 0.21
NUP54-213ENST00000513352 GUF1Q8N442 669 aaKnown RBP16.36■□□□□ 0.21
NUP54-213ENST00000513352 NXF3Q9H4D5 531 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms