RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CTAGE5O15320 804 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 DDX3YO15523 660 aaKnown RBP5.08□□□□□ -1.6
SF3B1-202ENST00000409915 CA12O43570 354 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TLR5O60602 858 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 XYLBO75191 536 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 COQ9O75208 318 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 MTA2O94776 668 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 IL33O95760 270 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 ASLP04424 464 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 VSIG8P0DPA2 414 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 EEF2P13639 858 aaKnown RBP5.08□□□□□ -1.6
SF3B1-202ENST00000409915 RHCEP18577 417 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 VCAM1P19320 739 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 SCP2P22307 547 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 CASQ1P31415 396 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 GRK6P43250 576 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 USP14P54578 494 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 NRLP54845 237 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 BACE1P56817 501 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 RHDQ02161 417 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 PDE4BQ07343 736 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 ALX1Q15699 326 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.08□□□□□ -1.67e-11■■□□□ 12.1
SF3B1-202ENST00000409915 UVSSAQ2YD98 709 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 PLA2G4EQ3MJ16 856 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 RASIP1Q5U651 963 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 UNC5AQ6ZN44 842 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TMEM179Q6ZVK1 233 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 SIAH1Q8IUQ4 282 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TAB3Q8N5C8 712 aaPredicted RBP5.08□□□□□ -1.6
SF3B1-202ENST00000409915 CD99L2Q8TCZ2 262 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TMEM40Q8WWA1 233 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 KLHL6Q8WZ60 621 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 NELL1Q92832 810 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 CEP95Q96GE4 821 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 PAWRQ96IZ0 340 aaKnown RBP5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TMEM87BQ96K49 555 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 SGCZQ96LD1 299 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 WDR18Q9BV38 432 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 DSCC1Q9BVC3 393 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 ARHGAP39Q9C0H5 1083 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 ASCC2Q9H1I8 757 aaPredicted RBP5.08□□□□□ -1.6
SF3B1-202ENST00000409915 RASSF4Q9H2L5 321 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 SH3GLB2Q9NR46 395 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 TMOD4Q9NZQ9 345 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 SALL4Q9UJQ4 1053 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 AGTPBP1Q9UPW5 1226 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 PTPN22Q9Y2R2 807 aa5.08□□□□□ -1.6
SF3B1-202ENST00000409915 CASP8AP2Q9UKL3 1982 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 PLIN4Q96Q06 1357 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 LAMA4Q16363 1823 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 IGKV6D-41A0A0C4DH26 115 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 SLC35F4A4IF30 521 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 TSPY2A6NKD2 308 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 RANBP6O60518 1105 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 SLC3A2P08195 630 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 TSPY3P0CV98 308 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 TSPY8P0CW00 308 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 HSD3B1P14060 373 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 RHOQP17081 205 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 ATICP31939 592 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 IGFALSP35858 605 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 FLT3P36888 993 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 PTGIRP43119 386 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 SCNN1BP51168 640 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 INHBEP58166 350 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 TFAP4Q01664 338 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CLN3Q13286 438 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 LAMC2Q13753 1193 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 COL9A3Q14050 684 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 IMMTQ16891 758 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 INAVAQ3KP66 663 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 AKNAD1Q5T1N1 836 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 AGAP9Q5VTM2 703 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 OTUD7BQ6GQQ9 843 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 EP400NLQ6ZTU2 488 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 FASTKD5Q7L8L6 764 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CHST15Q7LFX5 561 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CCNJLQ8IV13 435 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CMTR2Q8IYT2 770 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 ZNF444Q8N0Y2 327 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CCDC155Q8N6L0 562 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 ANKRD13CQ8N6S4 541 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 SMCR8Q8TEV9 937 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 RUFY2Q8WXA3 655 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 GOLGA1Q92805 767 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CCDC17Q96LX7 622 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CCDC138Q96M89 665 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 NELL2Q99435 816 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 PARK7Q99497 189 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 NUP88Q99567 741 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 ZKSCAN3Q9BRR0 538 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 AP1M1Q9BXS5 423 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 LSG1Q9H089 658 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 KIAA1683Q9H0B3 1180 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 CXorf56Q9H5V9 222 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 RPAP3Q9H6T3 665 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 RSAD1Q9HA92 442 aa5.07□□□□□ -1.6
SF3B1-202ENST00000409915 UPF2Q9HAU5 1272 aaKnown RBP5.07□□□□□ -1.6
SF3B1-202ENST00000409915 IL17RBQ9NRM6 502 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 193.3 ms