RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 PPP1R14AQ96A00 147 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 VPS50Q96JG6 964 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 CACNA2D2Q9NY47 1150 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM153AQ9UHL3 310 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 EYA2O00167 538 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 MEFVO15553 781 aaPredicted RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 CSE1LP55060 971 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LBRQ14739 615 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 DYMQ7RTS9 669 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 SMAD5Q99717 465 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 AZI2Q9H6S1 392 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ADGRA3Q8IWK6 1321 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 CFAP99D6REC4 459 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 RCN1Q15293 331 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 PLBD2Q8NHP8 589 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LOXHD1Q8IVV2 1947 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ANGPT2O15123 496 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 GNAT1P11488 350 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LRPAP1P30533 357 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ABCD1P33897 745 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 TTC6Q86TZ1 520 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 SNF8Q96H20 258 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 NHEJ1Q9H9Q4 299 aaPredicted RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ARHGEF5Q12774 1597 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 INTS1Q8N201 2190 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 TMOD1P28289 359 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 PTH1RQ03431 593 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 NFKBIAP25963 317 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ZNF618Q5T7W0 954 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 TTC30BQ8N4P2 665 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 APOL4Q9BPW4 351 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LBHD1Q9BQE6 289 aaPredicted RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 STK39Q9UEW8 545 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 NPC1L1Q9UHC9 1359 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 UNC13CQ8NB66 2214 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ZNF790Q6PG37 636 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 UNC45AQ9H3U1 944 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 PREX2Q70Z35 1606 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 AKAP10O43572 662 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 PAPOLAP51003 745 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 SPATA5Q8NB90 893 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 APPBP2Q92624 585 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ITSN1Q15811 1721 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 MAP3K13O43283 966 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 PSTPIP1O43586 416 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ABCE1P61221 599 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ABCC4O15439 1325 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SMIM31A0A1B0GVY4 71 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 TUBA3CQ13748 450 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 KIAA0408Q6ZU52 694 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 NUP93Q8N1F7 819 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CMTR1Q8N1G2 835 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 KBTBD3Q8NAB2 608 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 IMPAD1Q9NX62 359 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 DENND2AQ9ULE3 1009 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 AXIN1O15169 862 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 H2AFZP0C0S5 128 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 H2AFVQ71UI9 128 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 RMDN1Q96DB5 314 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SLC10A4Q96EP9 437 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SYNGAP1Q96PV0 1343 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 KRT1P04264 644 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 DNAL1Q4LDG9 190 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ZCWPW2Q504Y3 356 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 DEPTORQ8TB45 409 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 PCDHA7Q9UN72 937 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 TRPM6Q9BX84 2022 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 MAGEA2P43356 314 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SMYD4Q8IYR2 804 aaPredicted RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CFAP69A5D8W1 941 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 EIF2B5Q13144 721 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ARL8AQ96BM9 186 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CYFIP2Q96F07 1278 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CCDC87Q9NVE4 849 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 GAS7O60861 476 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CAV1Q03135 178 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 TNFAIP2Q03169 654 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 RBM46Q8TBY0 533 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ARMCX3Q9UH62 379 aaPredicted RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CPSF3Q9UKF6 684 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ADGRL2O95490 1459 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ZNF233A6NK53 670 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 PRLP01236 227 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 GYS1P13807 737 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 APPL2Q8NEU8 664 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 RTEL1Q9NZ71 1219 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CCDC59Q9P031 241 aaKnown RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ZMYM6O95789 1325 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 BTKQ06187 659 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 WLSQ5T9L3 541 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 WDR48Q8TAF3 677 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 ZNF483Q8TF39 744 aaPredicted RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 LMCD1Q9NZU5 365 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 SNTNA6NMZ2 147 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 HOXA7P31268 230 aaPredicted RBP11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 CENPAP49450 140 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 STARP49675 285 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 VPS37AQ8NEZ2 397 aa11.8□□□□□ -0.52
HDGFL3-201ENST00000299633 TBC1D22AQ8WUA7 517 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms