RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	TPO1	Q07824	586 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	SLD7	Q08457	257 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	ERG27	Q12452	347 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	KCS1	Q12494	1050 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YGL194C-A	Q2V2P6	80 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	REP2	P03872	296 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	PHO2	P07269	559 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	PUT1	P09368	476 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	RPL19A	P0CX82	189 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	RPL19B	P0CX83	189 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	CPR1	P14832	162 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	RPL24B	P24000	155 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	CDC20	P26309	610 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	COQ2	P32378	372 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	COS9	P36034	407 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	SRX1	P36077	127 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	ARN1	P38731	627 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	MIP6	P38760	659 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	PFS1	P38872	237 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	BAT1	P38891	393 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	ALP1	P38971	573 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	PAC2	P39937	518 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	HEM14	P40012	539 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	HXT9	P40885	567 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	YCH1	P42937	148 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	ASG7	P46993	209 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	NOG2	P53742	486 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	PLB2	Q03674	706 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	PPN1	Q04119	674 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	HLR1	Q04429	423 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	SNO4	Q04902	237 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	RRP45	Q05636	305 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	YHC1	Q05900	231 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	MDM30	Q05930	598 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	AAD15	Q08361	143 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	HSP33	Q08914	237 aa	Known RBP	5.06	□□□□□ -1.6
VPS1	YKR001C	HSP32	Q08992	237 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	PRM4	Q12498	284 aa		5.06	□□□□□ -1.6
VPS1	YKR001C	BRR2	P32639	2163 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	TPI1	P00942	248 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	RPL31A	P0C2H8	113 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	RPL31B	P0C2H9	113 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	YBR121C-A	P0C5L4	52 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	ERG11	P10614	530 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	DAL2	P25335	343 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	CAP1	P28495	268 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	ERG9	P29704	444 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	CYS4	P32582	507 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	PTM1	P32857	523 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	THI2	P38141	450 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	PPE1	P38796	400 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	IPI1	P38803	334 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	CHL4	P38907	458 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	CEM1	P39525	442 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	OXA1	P39952	402 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	RHO5	P53879	331 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	YLR460C	P54007	376 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	TIM8	P57744	87 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	TPS1	Q00764	495 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	AIM36	Q03798	255 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	RRG8	Q06109	277 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	BUD20	Q08004	166 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	YOR283W	Q12040	230 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	SPC3	Q12133	184 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	PER33	Q12144	273 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	USB1	Q12208	290 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	YOR029W	Q12243	111 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	JLP1	Q12358	412 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	RRI1	Q12468	440 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	RPL9A	P05738	191 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	SPS2	P08459	502 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	DPM1	P14020	267 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	RPL3	P14126	387 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	COQ3	P27680	312 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	APE2	P32454	952 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	LDB7	P38210	180 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	HAT2	P39984	401 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	SHO1	P40073	367 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	YER158C	P40095	573 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	GZF3	P42944	551 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	YJR115W	P47152	169 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	RPL9B	P51401	191 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	AIF1	P52923	378 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	TPN1	P53099	579 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	YNL010W	P53981	241 aa	Known RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	MZM1	Q03429	123 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	SDH7	Q04401	133 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	AGE1	Q04412	482 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	PRP11	Q07350	266 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS1	YKR001C	AIM6	Q07716	390 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	NBP2	Q12163	236 aa		5.05	□□□□□ -1.6
VPS1	YKR001C	THP2	O13539	261 aa	Known RBP	5.04	□□□□□ -1.6
VPS1	YKR001C	NFS1	P25374	497 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	OCH1	P31755	480 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	HES1	P35843	434 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	MRPL16	P38064	232 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	GOS1	P38736	223 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	MLH1	P38920	769 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	YJL118W	P47022	219 aa		5.04	□□□□□ -1.6
VPS1	YKR001C	RPS12	P48589	143 aa	Known RBP	5.04	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 88.8 ms