RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 TLE6Q9H808 572 aa11.67□□□□□ -0.54
CCDC9-203ENST00000596938 TBC1D13Q9NVG8 400 aa11.67□□□□□ -0.54
CCDC9-203ENST00000596938 DAXXQ9UER7 740 aaPredicted RBP11.67□□□□□ -0.54
CCDC9-203ENST00000596938 COL4A4P53420 1690 aaPredicted RBP11.67□□□□□ -0.54
CCDC9-203ENST00000596938 A0A1B0GUA9 196 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 MEIS3P2A8K0S8 358 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 ARF4P18085 180 aaPredicted RBP11.66□□□□□ -0.54
CCDC9-203ENST00000596938 PBX3P40426 434 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 NRIP1P48552 1158 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 DLX2Q07687 328 aaPredicted RBP11.66□□□□□ -0.54
CCDC9-203ENST00000596938 CUL4AQ13619 759 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 FAM187BQ17R55 369 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 LONRF3Q496Y0 759 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 KRT79Q5XKE5 535 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 MAEAQ7L5Y9 396 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 RBM23Q86U06 439 aaKnown RBP11.66□□□□□ -0.54
CCDC9-203ENST00000596938 FAM178BQ8IXR5 827 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 KCTD17Q8N5Z5 321 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 MRPL43Q8N983 215 aaKnown RBP11.66□□□□□ -0.54
CCDC9-203ENST00000596938 SMG8Q8ND04 991 aaKnown RBP11.66□□□□□ -0.54
CCDC9-203ENST00000596938 PRIMPOLQ96LW4 560 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 FZD8Q9H461 694 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 NRDE2Q9H7Z3 1164 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 GPRC5CQ9NQ84 441 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 KIAA1024Q9UPX6 916 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 DNM3Q9UQ16 869 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 RALGAPA2Q2PPJ7 1873 aa11.66□□□□□ -0.54
CCDC9-203ENST00000596938 PER2O15055 1255 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 INPPL1O15357 1258 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 LINC01565O15544 149 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 CSPG5O95196 566 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 EYA4O95677 639 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 ALDH2P05091 517 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 GALTP07902 379 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 ITGA4P13612 1032 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 NAMPTP43490 491 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 ATP2C1P98194 919 aaPredicted RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 RNASELQ05823 741 aaKnown RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 DUSP6Q16828 381 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 ARL6IP4Q66PJ3 421 aaKnown RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 CDCA2Q69YH5 1023 aaPredicted RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 TMEM184AQ6ZMB5 413 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 PPP4R3CPQ6ZMV5 832 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 TMC7Q7Z402 723 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 URGCPQ8TCY9 931 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 SNX29Q8TEQ0 813 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 MSLNLQ96KJ4 702 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 TCF25Q9BQ70 676 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 EIF2AQ9BY44 585 aaKnown RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 C2orf40Q9H1Z8 148 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 BHMT2Q9H2M3 363 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 RSAD1Q9HA92 442 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 DDX19AQ9NUU7 478 aaKnown RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 PRMT7Q9NVM4 692 aaPredicted RBP11.65□□□□□ -0.54
CCDC9-203ENST00000596938 CLEC1BQ9P126 229 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 STK39Q9UEW8 545 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 PRKAG3Q9UGI9 489 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 IPPQ9Y573 584 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 PCDHGC5Q9Y5F6 944 aa11.65□□□□□ -0.54
CCDC9-203ENST00000596938 LRRIQ4A6NIV6 560 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 NT5C1B-RDH14C9J2C7 533 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 ZC3H11AO75152 810 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 TBX10O75333 385 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 DDHD2O94830 711 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 IL9P15248 144 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 NDUFV1P49821 464 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 AFF1P51825 1210 aaKnown RBP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 EFNA5P52803 228 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 COASYQ13057 564 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 KCNC3Q14003 757 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 BMS1Q14692 1282 aaKnown RBP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 PPP2R5AQ15172 486 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 SMAD2Q15796 467 aaKnown RBP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 SLC27A1Q6PCB7 646 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 BRAPQ7Z569 592 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 DDX53Q86TM3 631 aaKnown RBP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 ZNF280BQ86YH2 543 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 ZBTB8OSQ8IWT0 167 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 HACE1Q8IYU2 909 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 GJD3Q8N144 294 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 BSNDQ8WZ55 320 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 KIFAP3Q92845 792 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 TMEM169Q96HH4 297 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 IGSF21Q96ID5 467 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 CPB2Q96IY4 423 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 TMEM175Q9BSA9 504 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 MMTAG2Q9BU76 263 aaKnown RBP11.64□□□□□ -0.55
CCDC9-203ENST00000596938 RNF39Q9H2S5 420 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 ENTPD7Q9NQZ7 604 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 CD207Q9UJ71 328 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 INPP5FQ9Y2H2 1132 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 GIT1Q9Y2X7 761 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 WDR81Q562E7 1941 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 LOXHD1Q8IVV2 1947 aa11.64□□□□□ -0.55
CCDC9-203ENST00000596938 ARL5CA6NH57 179 aa11.63□□□□□ -0.55
CCDC9-203ENST00000596938 PP2D1A8MPX8 630 aa11.63□□□□□ -0.55
CCDC9-203ENST00000596938 HIDE1A8MVS5 230 aa11.63□□□□□ -0.55
CCDC9-203ENST00000596938 ACKR2O00590 384 aa11.63□□□□□ -0.55
CCDC9-203ENST00000596938 B4GALT5O43286 388 aa11.63□□□□□ -0.55
CCDC9-203ENST00000596938 MBTPS2O43462 519 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms