RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	TMEM40	Q8WWA1	233 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	FIZ1	Q96SL8	496 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	IFIH1	Q9BYX4	1025 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	CCDC113	Q9H0I3	377 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	GZF1	Q9H116	711 aa	Predicted RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	WNT8A	Q9H1J5	351 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	MINDY3	Q9H8M7	445 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	ANO10	Q9NW15	660 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	MAPK8IP1	Q9UQF2	711 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	PIN4	Q9Y237	131 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	GDA	Q9Y2T3	454 aa		13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	NOC2L	Q9Y3T9	749 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-223	ENST00000555904	UMODL1	Q5DID0	1318 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	TSPAN1	O60635	241 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	PPP1R37	O75864	691 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	PRPF6	O94906	941 aa	Known RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	ZSCAN20	P17040	1043 aa	Predicted RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	AXL	P30530	894 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	CD52	P31358	61 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	MATR3	P43243	847 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	NLRP12	P59046	1061 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	KNOP1	Q1ED39	458 aa	Known RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	BMT2	Q1RMZ1	405 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	COBLL1	Q53SF7	1204 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	MFSD5	Q6N075	450 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	NOTUM	Q6P988	496 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	ZPBP2	Q6X784	338 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	NELFCD	Q8IXH7	590 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	GUF1	Q8N442	669 aa	Known RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	GLIS3	Q8NEA6	775 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	SCFD1	Q8WVM8	642 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	SEPT8	Q92599	483 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	APBB2	Q92870	758 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	KCNN1	Q92952	543 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	SCLY	Q96I15	445 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	ADPGK	Q9BRR6	497 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	FGFBP2	Q9BYJ0	223 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	NAT10	Q9H0A0	1025 aa	Known RBP	13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	GBP3	Q9H0R5	595 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	FZD8	Q9H461	694 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	PADI3	Q9ULW8	664 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	ST3GAL5	Q9UNP4	418 aa		13.73	□□□□□ -0.21
ABCD4-223	ENST00000555904	N4BP3	O15049	544 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	PFKM	P08237	780 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	FGFR4	P22455	802 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	PRCP	P42785	496 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	FPGS	Q05932	587 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	TYRO3	Q06418	890 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	DPCR1	Q3MIW9	517 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	ATF7IP2	Q5U623	682 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	KLHL10	Q6JEL2	608 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	TRAF7	Q6Q0C0	670 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	DEFB128	Q7Z7B8	93 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	FAM228A	Q86W67	206 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	RPUSD2	Q8IZ73	545 aa	Known RBP	13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	ZNF507	Q8TCN5	953 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	CCDC51	Q96ER9	411 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	TSG101	Q99816	390 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	TCHP	Q9BT92	498 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	STRA6	Q9BX79	667 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	FTHL17	Q9BXU8	183 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	CHST12	Q9NRB3	414 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	AGPAT5	Q9NUQ2	364 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	CGN	Q9P2M7	1197 aa	Known RBP	13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	ANKFY1	Q9P2R3	1169 aa		13.72	□□□□□ -0.21
ABCD4-223	ENST00000555904	BICDL2	A1A5D9	508 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	CLDN3	O15551	220 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	CALU	O43852	315 aa	Predicted RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	NBN	O60934	754 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TOM1L1	O75674	476 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	SNRPF	P62306	86 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	PAK1	Q13153	545 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	PPIG	Q13427	754 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	2e-7	■■□□□ 14
ABCD4-223	ENST00000555904	MBTPS1	Q14703	1052 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	ZNF568	Q3ZCX4	644 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TWF2	Q6IBS0	349 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	SLFN12L	Q6IEE8	588 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TAS1R3	Q7RTX0	852 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	ADSSL1	Q8N142	457 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TARS2	Q9BW92	718 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TRIM6	Q9C030	488 aa	Predicted RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	AGO3	Q9H9G7	860 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	ERVK-5	Q9HDB9	667 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TYW1	Q9NV66	732 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TNFSF13B	Q9Y275	285 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	TANC1	Q9C0D5	1861 aa		13.71	□□□□□ -0.21
ABCD4-223	ENST00000555904	PDXK	O00764	312 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	B4GALT5	O43286	388 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	CAPN15	O75808	1086 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	PIGR	P01833	764 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	ACTN1	P12814	892 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	CSF2RA	P15509	400 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	SYN1	P17600	705 aa		13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	ARF4	P18085	180 aa	Predicted RBP	13.7	□□□□□ -0.22
ABCD4-223	ENST00000555904	BMP6	P22004	513 aa		13.7	□□□□□ -0.22

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