RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CNNM3Q8NE01 707 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 HDAC7Q8WUI4 952 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 SLC7A3Q8WY07 619 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 RPS6KC1Q96S38 1066 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 VN1R3Q9BXE9 311 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 TBC1D17Q9HA65 648 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 AGPAT5Q9NUQ2 364 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 CA14Q9ULX7 337 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 SIT1Q9Y3P8 196 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 EP300Q09472 2414 aaPredicted RBP18.97■□□□□ 0.63
VPS29-204ENST00000548259 NRP1O14786 923 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 NARSO43776 548 aaKnown RBP18.96■□□□□ 0.63
VPS29-204ENST00000548259 LILRB3O75022 631 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 NCBP1Q09161 790 aaKnown RBP18.96■□□□□ 0.63
VPS29-204ENST00000548259 PHLDB3Q6NSJ2 640 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 KIAA2013Q8IYS2 634 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 SMG7Q92540 1137 aaKnown RBP18.96■□□□□ 0.63
VPS29-204ENST00000548259 RUBCNQ92622 972 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 SHDQ96IW2 340 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 PLEKHA4Q9H4M7 779 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 ZNF292O60281 2723 aa18.96■□□□□ 0.63
VPS29-204ENST00000548259 KRBA1A5PL33 1030 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 MEIS3P2A8K0S8 358 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 INPPL1O15357 1258 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 DDHD2O94830 711 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 C1RP00736 705 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 GLUD2P49448 558 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 AGMOQ6ZNB7 445 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 SRGAP1Q7Z6B7 1085 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 MRPL10Q7Z7H8 261 aaKnown RBP18.95■□□□□ 0.62
VPS29-204ENST00000548259 PHKBQ93100 1093 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 RMDN1Q96DB5 314 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 BORCS6Q96GS4 357 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 HERC2P3Q9BVR0 1158 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 PPME1Q9Y570 386 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 COL4A3BPQ9Y5P4 624 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 R4GN57 208 aa18.95■□□□□ 0.62
VPS29-204ENST00000548259 PSMD10O75832 226 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 POMCP01189 267 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 OR1G1P47890 313 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 NLRP5P59047 1200 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 PSMC5P62195 406 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 Q4G0T1 1027 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 SPECC1Q5M775 1068 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 PSPC1Q8WXF1 523 aaKnown RBP18.94■□□□□ 0.62
VPS29-204ENST00000548259 RSAD2Q8WXG1 361 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 RIN2Q8WYP3 895 aaPredicted RBP18.94■□□□□ 0.62
VPS29-204ENST00000548259 RNF26Q9BY78 433 aaPredicted RBP18.94■□□□□ 0.62
VPS29-204ENST00000548259 ARHGEF3Q9NR81 526 aa18.94■□□□□ 0.62
VPS29-204ENST00000548259 PRG3Q9Y2Y8 225 aaPredicted RBP18.94■□□□□ 0.62
VPS29-204ENST00000548259 TEX28O15482 410 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 ITGA4P13612 1032 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 CREMQ03060 361 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 KSR1Q8IVT5 923 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 C1orf210Q8IVY1 113 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 HACE1Q8IYU2 909 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 TBCKQ8TEA7 893 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 SH2D3AQ9BRG2 576 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 SH3GLB2Q9NR46 395 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.93■□□□□ 0.62
VPS29-204ENST00000548259 ZDHHC7Q9NXF8 308 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 ZFP37Q9Y6Q3 630 aaPredicted RBP18.93■□□□□ 0.62
VPS29-204ENST00000548259 DCHS1Q96JQ0 3298 aa18.93■□□□□ 0.62
VPS29-204ENST00000548259 ADAMTS3O15072 1205 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 GAS2O43903 313 aaKnown RBP18.92■□□□□ 0.62
VPS29-204ENST00000548259 N4BP1O75113 896 aaKnown RBP18.92■□□□□ 0.62
VPS29-204ENST00000548259 ERLIN2O94905 339 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 NCLP19338 710 aaKnown RBP18.92■□□□□ 0.62
VPS29-204ENST00000548259 SDHBP21912 280 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 PCBP1Q15365 356 aaKnown RBP eCLIP18.92■□□□□ 0.62
VPS29-204ENST00000548259 ADCK5Q3MIX3 580 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 DCLRE1AQ6PJP8 1040 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 GPR152Q8TDT2 470 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 MYADMQ96S97 322 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 CEP89Q96ST8 783 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 COLEC11Q9BWP8 271 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 IFT122Q9HBG6 1241 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 RXFP1Q9HBX9 757 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 VPS54Q9P1Q0 977 aa18.92■□□□□ 0.62
VPS29-204ENST00000548259 TMEM150BA6NC51 233 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 ASAP2O43150 1006 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 B4GALT3O60512 393 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 KINO60870 393 aaKnown RBP18.91■□□□□ 0.62
VPS29-204ENST00000548259 DCNP07585 359 aaKnown RBP18.91■□□□□ 0.62
VPS29-204ENST00000548259 SP9P0CG40 484 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 SRGAP2CP0DJJ0 459 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 LAMP2P13473 410 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 RFC5P40937 340 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 QARSP47897 775 aaKnown RBP18.91■□□□□ 0.62
VPS29-204ENST00000548259 GPR65Q8IYL9 337 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 TRIM22Q8IYM9 498 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 FEZF2Q8TBJ5 459 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 TCP11Q8WWU5 503 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 BRF1Q92994 677 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 CCDC51Q96ER9 411 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 CEP170P1Q96L14 293 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 SLC26A6Q9BXS9 759 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 SLC2A4RGQ9NR83 387 aa18.91■□□□□ 0.62
VPS29-204ENST00000548259 DENND4AQ7Z401 1863 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 CYP3A7-CYP3A51PA0A087WV96 503 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 236.2 ms