RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NT5DC4Q86YG4 428 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 MCPH1Q8NEM0 835 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CFAP61Q8NHU2 1237 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TRIM55Q9BYV6 548 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TOPORSQ9NS56 1045 aaPredicted RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 GCNT4Q9P109 453 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 LSM7Q9UK45 103 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 DYTNA2CJ06 578 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 LRG1P02750 347 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 KRT19P08727 400 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 BMP3P12645 472 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 SERPINB6P35237 376 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 USP11P51784 963 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 JADE1Q6IE81 842 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ANKRD23Q86SG2 305 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 OTUD7AQ8TE49 926 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PARD3BQ8TEW8 1205 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.32□□□□□ -1.085e-7■■□□□ 12.6
VPS13D-211ENST00000543710 EPC1Q9H2F5 836 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 NDST4Q9H3R1 872 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ATP6V0A4Q9HBG4 840 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 STOML1Q9UBI4 398 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 NFU1Q9UMS0 254 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF148Q9UQR1 794 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 H7C0C1 242 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 XYLBO75191 536 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PLS3P13797 630 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 CD19P15391 556 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 IFNA8P32881 189 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ATP5OP48047 213 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PSMD7P51665 324 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ARHGDIAP52565 204 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TIMM10P62072 90 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 GPC5P78333 572 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 CASP8Q14790 479 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TMCO5AQ8N6Q1 288 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PROCA1Q8NCQ7 364 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 MAGOHBQ96A72 148 aaKnown RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 VPS50Q96JG6 964 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 RPF1Q9H9Y2 349 aaKnown RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ABCF3Q9NUQ8 709 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 MRFAP1Q9Y605 127 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TMEM265A0A087WTH1 108 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 CREB3O43889 395 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PRPSAP2O60256 369 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PLA2G4BP0C869 781 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 STAT3P40763 770 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 STAT2P52630 851 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PPP2R2AP63151 447 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PSRC1Q6PGN9 363 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DSTYKQ6XUX3 929 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 KCTD6Q8NC69 237 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF280CQ8ND82 737 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DPF2Q92785 391 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PRDM16Q9HAZ2 1276 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 EMILIN3Q9NT22 766 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 A0A1B0GW55 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L2P0CJ85 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L3P0CJ86 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L4P0CJ87 422 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L5P0CJ88 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L6P0CJ89 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4L7P0CJ90 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 CENPCQ03188 943 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 KRT33BQ14525 404 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PDIA5Q14554 519 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 SETD3Q86TU7 594 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 SENP6Q9GZR1 1112 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DUX4Q9UBX2 424 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 DIP2CQ9Y2E4 1556 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TXNDC9O14530 226 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 SMIM24O75264 130 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 KRT7P08729 469 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 ALDH7A1P49419 539 aaKnown RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 KRT76Q01546 638 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 LRMPQ12912 555 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TWF2Q6IBS0 349 aaKnown RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 EAF2Q96CJ1 260 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-211ENST00000543710 SHDQ96IW2 340 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 TRAIPQ9BWF2 469 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PARD6BQ9BYG5 372 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 OLFML3Q9NRN5 406 aa8.32□□□□□ -1.08
VPS13D-211ENST00000543710 PQBP1O60828 265 aaKnown RBP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 GPC4O75487 556 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 ESRRBO95718 433 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 DNAL1Q4LDG9 190 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 POMGNT1Q8WZA1 660 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 HPS3Q969F9 1004 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 RUBCNLQ9H714 662 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 EPB41L5Q9HCM4 733 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 STK38LQ9Y2H1 464 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 AFG3L2Q9Y4W6 797 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 UBN2Q6ZU65 1347 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 BUB1O43683 1085 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 PAX3P23760 479 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 YWHAGP61981 247 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS13D-211ENST00000543710 COG2Q14746 738 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 NXNQ6DKJ4 435 aa8.31□□□□□ -1.08
VPS13D-211ENST00000543710 SESTD1Q86VW0 696 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms