RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 IKBKEQ14164 716 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 RNF149Q8NC42 400 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 MCPH1Q8NEM0 835 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 SCLT1Q96NL6 688 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 TMX1Q9H3N1 280 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 ERVK-5Q9HDB9 667 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 CITO14578 2027 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-207ENST00000597136 MGEA5O60502 916 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 PRR29P0C7W0 189 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 AMPD3Q01432 767 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 MAPK7Q13164 816 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 PNOCQ13519 176 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 POSTNQ15063 836 aa16.58■□□□□ 0.24
TRIM28-207ENST00000597136 TDRD15B5MCY1 1934 aaKnown RBP16.58■□□□□ 0.24
TRIM28-207ENST00000597136 MYMKA6NI61 221 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ENPP3O14638 875 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ASAP2O43150 1006 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 GTPBP6O43824 516 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 HIP1RO75146 1068 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ACTN1P12814 892 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 CASP1P29466 404 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 WDR5P61964 334 aaKnown RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 CDC42EP1Q00587 391 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 PAK2Q13177 524 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 MXD4Q14582 209 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 RBM43Q6ZSC3 357 aaKnown RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ZNF410Q86VK4 478 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 GPBP1Q86WP2 473 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 USP38Q8NB14 1042 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 LINC01599Q8WXQ3 324 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ERCC4Q92889 916 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 C7orf25Q9BPX7 421 aa16.57■□□□□ 0.24
TRIM28-207ENST00000597136 GCOM2Q9BZD3 368 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-207ENST00000597136 ABHD14A-ACY1A0A1B0GW23 586 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 SOX1O00570 391 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-207ENST00000597136 MYL1P05976 194 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 PTENP60484 403 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 DPYDQ12882 1025 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 CUL4BQ13620 913 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 HABP4Q5JVS0 413 aaKnown RBP16.56■□□□□ 0.24
TRIM28-207ENST00000597136 TRIM9Q9C026 710 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 LRRC27Q9C0I9 530 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 BLZF1Q9H2G9 400 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 SLC4A7Q9Y6M7 1214 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 TRANK1O15050 2925 aa16.56■□□□□ 0.24
TRIM28-207ENST00000597136 A0A1W2PPC1 479 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 GPR182O15218 404 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 ZSCAN23Q3MJ62 389 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 CNNM4Q6P4Q7 775 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 ZNF710Q8N1W2 664 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 DDX12PQ92771 950 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 KIFC3Q9BVG8 833 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 GZF1Q9H116 711 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-207ENST00000597136 KIAA1468Q9P260 1216 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 PCDHA5Q9Y5H7 936 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 MYO7AQ13402 2215 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 CDH23Q9H251 3354 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 LRRIQ4A6NIV6 560 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 BAIAP3O94812 1187 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 LETM1O95202 739 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-207ENST00000597136 GUCY2CP25092 1073 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 RABGGTBP53611 331 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 PEX3P56589 373 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 GIT2Q14161 759 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 FAM117BQ6P1L5 589 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 SPATA20Q8TB22 786 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 APBB2Q92870 758 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 REEP2Q9BRK0 252 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 KCND2Q9NZV8 630 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 USP20Q9Y2K6 914 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 ADGRA3Q8IWK6 1321 aa16.55■□□□□ 0.24
TRIM28-207ENST00000597136 SMC2O95347 1197 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 PBX2P40425 430 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 KCNJ6P48051 423 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 SARSP49591 514 aaKnown RBP16.54■□□□□ 0.24
TRIM28-207ENST00000597136 POU5F1BQ06416 359 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 DSC3Q14574 896 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 DYMQ7RTS9 669 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 SRGAP1Q7Z6B7 1085 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 KIFAP3Q92845 792 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 DNAJC19Q96DA6 116 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 LRCH3Q96II8 777 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 ADAM2Q99965 735 aa16.54■□□□□ 0.24
TRIM28-207ENST00000597136 TTLL13PA6NNM8 815 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 INO80B-WBP1J3KQ70 363 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 UPP2O95045 317 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 MYOGP15173 224 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 ATP2A2P16615 1042 aaKnown RBP16.53■□□□□ 0.24
TRIM28-207ENST00000597136 IBSPP21815 317 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-207ENST00000597136 PHKA2P46019 1235 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 ASIC1P78348 528 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 MBTD1Q05BQ5 628 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 TFDP1Q14186 410 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 LRIT3Q3SXY7 679 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 NT5DC1Q5TFE4 455 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 CATSPER4Q7RTX7 472 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 IFNLR1Q8IU57 520 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-207ENST00000597136 MYOCDQ8IZQ8 938 aa16.53■□□□□ 0.24
TRIM28-207ENST00000597136 SMARCE1Q969G3 411 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms