RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TMEM173Q86WV6 379 aaPredicted RBP19.04■□□□□ 0.64
VPS29-204ENST00000548259 RDM1Q8NG50 284 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 NXPE3Q969Y0 559 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 JPH2Q9BR39 696 aaPredicted RBP19.04■□□□□ 0.64
VPS29-204ENST00000548259 TEKT3Q9BXF9 490 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 FAM105AQ9NUU6 356 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 KANSL3Q9P2N6 904 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 WNT16Q9UBV4 365 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 BRPF3Q9ULD4 1205 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 PI15O43692 258 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 ZNF623O75123 536 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 ALDH2P05091 517 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 HMGB1P09429 215 aaKnown RBP19.03■□□□□ 0.64
VPS29-204ENST00000548259 NPR3P17342 541 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 CLCN4P51793 760 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 KRT32Q14532 448 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 XKR3Q5GH77 459 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 CATSPER4Q7RTX7 472 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 KLHL5Q96PQ7 755 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 SEPT9Q9UHD8 586 aaPredicted RBP19.03■□□□□ 0.64
VPS29-204ENST00000548259 EVPLQ92817 2033 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 VPS13AQ96RL7 3174 aa19.03■□□□□ 0.64
VPS29-204ENST00000548259 A0A087WZ62 844 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 CHMP2AO43633 222 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 CSDE1O75534 798 aaKnown RBP19.02■□□□□ 0.64
VPS29-204ENST00000548259 URODP06132 367 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 GBP2P32456 591 aaPredicted RBP19.02■□□□□ 0.64
VPS29-204ENST00000548259 SLC11A1P49279 550 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 COL9A3Q14050 684 aaPredicted RBP19.02■□□□□ 0.64
VPS29-204ENST00000548259 LONRF3Q496Y0 759 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 LRCH2Q5VUJ6 765 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 CCDC148Q8NFR7 591 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 CMASQ8NFW8 434 aaPredicted RBP19.02■□□□□ 0.64
VPS29-204ENST00000548259 LPPQ93052 612 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 FDXACB1Q9BRP7 624 aaPredicted RBP19.02■□□□□ 0.64
VPS29-204ENST00000548259 FAN1Q9Y2M0 1017 aa19.02■□□□□ 0.64
VPS29-204ENST00000548259 MYO10Q9HD67 2058 aa19.02■□□□□ 0.63
VPS29-204ENST00000548259 OFD1O75665 1012 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 SSBP05455 408 aaKnown RBP eCLIP19.01■□□□□ 0.63
VPS29-204ENST00000548259 ADH1AP07327 375 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 CNPP09543 421 aaKnown RBP19.01■□□□□ 0.63
VPS29-204ENST00000548259 USP11P51784 963 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 EXOSC10Q01780 885 aaKnown RBP19.01■□□□□ 0.63
VPS29-204ENST00000548259 TARBP2Q15633 366 aaKnown RBP19.01■□□□□ 0.63
VPS29-204ENST00000548259 MTERF2Q49AM1 385 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 RHPN2Q8IUC4 686 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 CCDC136Q96JN2 1154 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 HINFPQ9BQA5 517 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 TMEM175Q9BSA9 504 aa19.01■□□□□ 0.63
VPS29-204ENST00000548259 NIFKQ9BYG3 293 aaKnown RBP19.01■□□□□ 0.63
VPS29-204ENST00000548259 SUCLA2Q9P2R7 463 aaPredicted RBP19.01■□□□□ 0.63
VPS29-204ENST00000548259 CNTNAP2Q9UHC6 1331 aa19■□□□□ 0.63
VPS29-204ENST00000548259 MSH4O15457 936 aa19■□□□□ 0.63
VPS29-204ENST00000548259 CFHP08603 1231 aa19■□□□□ 0.63
VPS29-204ENST00000548259 CDC27P30260 824 aa19■□□□□ 0.63
VPS29-204ENST00000548259 DGLUCYQ7Z3D6 616 aa19■□□□□ 0.63
VPS29-204ENST00000548259 MIER3Q7Z3K6 550 aa19■□□□□ 0.63
VPS29-204ENST00000548259 EXOC8Q8IYI6 725 aa19■□□□□ 0.63
VPS29-204ENST00000548259 NLRP4Q96MN2 994 aa19■□□□□ 0.63
VPS29-204ENST00000548259 RHOBTB2Q9BYZ6 727 aa19■□□□□ 0.63
VPS29-204ENST00000548259 C22orf23Q9BZE7 217 aa19■□□□□ 0.63
VPS29-204ENST00000548259 DNAJB4Q9UDY4 337 aa19■□□□□ 0.63
VPS29-204ENST00000548259 NR1I2O75469 434 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 ADD1P35611 737 aaKnown RBP18.99■□□□□ 0.63
VPS29-204ENST00000548259 AK2P54819 239 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 UGCGQ16739 394 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 BCL7CQ8WUZ0 217 aaPredicted RBP18.99■□□□□ 0.63
VPS29-204ENST00000548259 SLC5A5Q92911 643 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 LENG9Q96B70 501 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 TCEANC2Q96MN5 208 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 UNC45AQ9H3U1 944 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 RSAD1Q9HA92 442 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 WDR6Q9NNW5 1121 aaKnown RBP18.99■□□□□ 0.63
VPS29-204ENST00000548259 UBN1Q9NPG3 1134 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 MAN1C1Q9NR34 630 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 FAM217BQ9NTX9 383 aaPredicted RBP18.99■□□□□ 0.63
VPS29-204ENST00000548259 PCDHB2Q9Y5E7 798 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 CACNA1AO00555 2505 aa18.99■□□□□ 0.63
VPS29-204ENST00000548259 DMDP11532 3685 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 CCDC195A0A1B0GUA6 201 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 GLUD1P00367 558 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 SOD2P04179 222 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 SRFP11831 508 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 DRP2Q13474 957 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 PIDD1Q9HB75 910 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.98■□□□□ 0.63
VPS29-204ENST00000548259 EPS15L1Q9UBC2 864 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 MYH9P35579 1960 aaKnown RBP18.98■□□□□ 0.63
VPS29-204ENST00000548259 CLUHO75153 1309 aa18.98■□□□□ 0.63
VPS29-204ENST00000548259 WDR87Q6ZQQ6 2873 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 IGKV6-21A0A0C4DH24 114 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 DDX11L8A8MPP1 907 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 C2CD2LO14523 706 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 PRPF3O43395 683 aaKnown RBP18.97■□□□□ 0.63
VPS29-204ENST00000548259 DKC1O60832 514 aaKnown RBP eCLIP18.97■□□□□ 0.63
VPS29-204ENST00000548259 MAFO75444 373 aaPredicted RBP18.97■□□□□ 0.63
VPS29-204ENST00000548259 PUM1Q14671 1186 aaKnown RBP eCLIP18.97■□□□□ 0.63
VPS29-204ENST00000548259 TSGA10IPQ3SY00 556 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 ZNF280BQ86YH2 543 aa18.97■□□□□ 0.63
VPS29-204ENST00000548259 SLC44A3Q8N4M1 653 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms