RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PGBD4	Q96DM1	585 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	KLHL5	Q96PQ7	755 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	TMEM175	Q9BSA9	504 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	TBC1D17	Q9HA65	648 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	WDR6	Q9NNW5	1121 aa	Known RBP	14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	MRPL17	Q9NRX2	175 aa	Known RBP	14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	FAM105A	Q9NUU6	356 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079		R4GN57	208 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	MYO10	Q9HD67	2058 aa		14.02	□□□□□ -0.17
CAPN1-223	ENST00000533079	NARS	O43776	548 aa	Known RBP	14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZNF623	O75123	536 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	PAPLN	O95428	1278 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	C1R	P00736	705 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	UROD	P06132	367 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	ADH1A	P07327	375 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	CNP	P09543	421 aa	Known RBP	14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	SFN	P31947	248 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	FUT2	Q10981	343 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	TRMT1L	Q7Z2T5	733 aa	Known RBP	14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	RAB11FIP4	Q86YS3	637 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	CCDC12	Q8WUD4	166 aa	Predicted RBP	14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	HDAC7	Q8WUI4	952 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	VN1R3	Q9BXE9	311 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	MAN1C1	Q9NR34	630 aa		14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	PIN4	Q9Y237	131 aa	Known RBP	14.01	□□□□□ -0.17
CAPN1-223	ENST00000533079	CNTNAP2	Q9UHC6	1331 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZNF862	O60290	1169 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	LILRB3	O75022	631 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	N4BP1	O75113	896 aa	Known RBP	14	□□□□□ -0.17
CAPN1-223	ENST00000533079	SP9	P0CG40	484 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	FGFR4	P22455	802 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	GBP2	P32456	591 aa	Predicted RBP	14	□□□□□ -0.17
CAPN1-223	ENST00000533079	SLC11A1	P49279	550 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	DNM2	P50570	870 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	JAK3	P52333	1124 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	RCAN1	P53805	252 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	RTN1	Q16799	776 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	C1orf210	Q8IVY1	113 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	REXO1	Q8N1G1	1221 aa	Known RBP	14	□□□□□ -0.17
CAPN1-223	ENST00000533079	SLC44A3	Q8N4M1	653 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	GPR161	Q8N6U8	529 aa	Known RBP	14	□□□□□ -0.17
CAPN1-223	ENST00000533079	ARHGEF3	Q9NR81	526 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	14	□□□□□ -0.17
CAPN1-223	ENST00000533079	DLGAP2	Q9P1A6	1054 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	KANSL3	Q9P2N6	904 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	DNAJB4	Q9UDY4	337 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	CA14	Q9ULX7	337 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	INPP5F	Q9Y2H2	1132 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	SIT1	Q9Y3P8	196 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	FANCM	Q8IYD8	2048 aa		14	□□□□□ -0.17
CAPN1-223	ENST00000533079	SLC27A2	O14975	620 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	SPTLC1	O15269	473 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	KIN	O60870	393 aa	Known RBP	13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	OFD1	O75665	1012 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	GLUD1	P00367	558 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	SOD2	P04179	222 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	CIITA	P33076	1130 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	TARBP2	Q15633	366 aa	Known RBP	13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZNF528	Q3MIS6	628 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	JAKMIP3	Q5VZ66	844 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	PJA1	Q8NG27	643 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	RDM1	Q8NG50	284 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	RIN2	Q8WYP3	895 aa	Predicted RBP	13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	LPP	Q93052	612 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZNF668	Q96K58	619 aa	Predicted RBP	13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	RIT2	Q99578	217 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	HERC2P3	Q9BVR0	1158 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZMYND12	Q9H0C1	365 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	GBP3	Q9H0R5	595 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	SLC2A4RG	Q9NR83	387 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	DISC1	Q9NRI5	854 aa		13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079		V9GY48	417 aa	Predicted RBP	13.99	□□□□□ -0.17
CAPN1-223	ENST00000533079	WDR81	Q562E7	1941 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	IGKV6-21	A0A0C4DH24	114 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	CCDC195	A0A1B0GUA6	201 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	INPPL1	O15357	1258 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZBTB43	O43298	467 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	PFKFB3	Q16875	520 aa	Predicted RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	PRR16	Q569H4	304 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	FEZF2	Q8TBJ5	459 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	GPR152	Q8TDT2	470 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	LENG9	Q96B70	501 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	SHD	Q96IW2	340 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	FAM193B	Q96PV7	902 aa	Predicted RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	RPS6KC1	Q96S38	1066 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	JPH2	Q9BR39	696 aa	Predicted RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	NIFK	Q9BYG3	293 aa	Known RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	PLEKHA4	Q9H4M7	779 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	RSAD1	Q9HA92	442 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	C6orf50	Q9HD87	102 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	AGPAT5	Q9NUQ2	364 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZDHHC7	Q9NXF8	308 aa		13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.98	□□□□□ -0.17
CAPN1-223	ENST00000533079	ANHX	E9PGG2	379 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	GAS7	O60861	476 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	ALDH2	P05091	517 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	DCN	P07585	359 aa	Known RBP	13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	GNA11	P29992	359 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	XKR3	Q5GH77	459 aa		13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms