RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TMEM40Q8WWA1 233 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 NOC2LQ9Y3T9 749 aaKnown RBP16.51■□□□□ 0.23
NUP54-213ENST00000513352 TRAK2O60296 914 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 RPN1P04843 607 aaKnown RBP16.5■□□□□ 0.23
NUP54-213ENST00000513352 MYL1P05976 194 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 PTMSP20962 102 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 CD52P31358 61 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 ZNF131P52739 623 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 PTENP60484 403 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 CAMK4Q16566 473 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 FAM228AQ86W67 206 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 RPUSD2Q8IZ73 545 aaKnown RBP16.5■□□□□ 0.23
NUP54-213ENST00000513352 TET1Q8NFU7 2136 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 ERCC4Q92889 916 aaPredicted RBP16.5■□□□□ 0.23
NUP54-213ENST00000513352 IFIH1Q9BYX4 1025 aaKnown RBP16.5■□□□□ 0.23
NUP54-213ENST00000513352 OSBPL7Q9BZF2 842 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 MRPL44Q9H9J2 332 aaKnown RBP16.5■□□□□ 0.23
NUP54-213ENST00000513352 IFT122Q9HBG6 1241 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 SEL1LQ9UBV2 794 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 PDE4DIPQ5VU43 2346 aa16.5■□□□□ 0.23
NUP54-213ENST00000513352 ADGRA3Q8IWK6 1321 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 PVALEFA0A1B0GWK0 134 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 H0YCG3 227 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 H0YGN5 161 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 GPR182O15218 404 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 SMC2O95347 1197 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 PRKCBP05771 671 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 ACRP10323 421 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 NMT1P30419 496 aaKnown RBP16.49■□□□□ 0.23
NUP54-213ENST00000513352 EFNA5P52803 228 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 DPYDQ12882 1025 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 MAPK6Q16659 721 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 CDCA2Q69YH5 1023 aaPredicted RBP16.49■□□□□ 0.23
NUP54-213ENST00000513352 CNNM4Q6P4Q7 775 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 USP38Q8NB14 1042 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 SPIRE2Q8WWL2 714 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 SEPT8Q92599 483 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 SMARCE1Q969G3 411 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 NUP62CLQ9H1M0 184 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 CLSTN2Q9H4D0 955 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 MINDY3Q9H8M7 445 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 AGO3Q9H9G7 860 aaKnown RBP16.49■□□□□ 0.23
NUP54-213ENST00000513352 KCNG1Q9UIX4 513 aa16.49■□□□□ 0.23
NUP54-213ENST00000513352 PHLPP2Q6ZVD8 1323 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 FRMD3A2A2Y4 597 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 DENND3A2RUS2 1198 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 K7ERI5 159 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 GCNT3O95395 438 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 IBSPP21815 317 aaPredicted RBP16.48■□□□□ 0.23
NUP54-213ENST00000513352 MAGEA10P43363 369 aaPredicted RBP16.48■□□□□ 0.23
NUP54-213ENST00000513352 NCKAP1LP55160 1127 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 MBTD1Q05BQ5 628 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 POU5F1BQ06416 359 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 STRN3Q13033 797 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 KMT5BQ4FZB7 885 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 FAM26FQ5R3K3 315 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 HAUS6Q7Z4H7 955 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 HPS3Q969F9 1004 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 ERVK-5Q9HDB9 667 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 IL23AQ9NPF7 189 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 PADI3Q9ULW8 664 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 ST3GAL5Q9UNP4 418 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 SQORQ9Y6N5 450 aa16.48■□□□□ 0.23
NUP54-213ENST00000513352 CEP290O15078 2479 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 KLRC4O43908 158 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 PFKMP08237 780 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 NCBP1Q09161 790 aaKnown RBP16.47■□□□□ 0.23
NUP54-213ENST00000513352 GPNMBQ14956 572 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 CNKSR3Q6P9H4 555 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 STXBP4Q6ZWJ1 553 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 IFNLR1Q8IU57 520 aaPredicted RBP16.47■□□□□ 0.23
NUP54-213ENST00000513352 SLC17A8Q8NDX2 589 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 TMEM161BQ8NDZ6 487 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 DBF4BQ8NFT6 615 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 BICD1Q96G01 975 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 NFKBIZQ9BYH8 718 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 SLC39A2Q9NP94 309 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 PRMT7Q9NVM4 692 aaPredicted RBP16.47■□□□□ 0.23
NUP54-213ENST00000513352 ARHGAP28Q9P2N2 729 aa16.47■□□□□ 0.23
NUP54-213ENST00000513352 PIN4Q9Y237 131 aaKnown RBP16.47■□□□□ 0.23
NUP54-213ENST00000513352 B4GALT5O43286 388 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 CXCL10P02778 98 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 MYBP10242 640 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 MAPTP10636 758 aaKnown RBP16.46■□□□□ 0.23
NUP54-213ENST00000513352 ACTN1P12814 892 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 PRPF4BQ13523 1007 aaKnown RBP16.46■□□□□ 0.23
NUP54-213ENST00000513352 ZC2HC1CQ53FD0 456 aaPredicted RBP16.46■□□□□ 0.23
NUP54-213ENST00000513352 PLEKHG4Q58EX7 1191 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 APBB2Q92870 758 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 CPB2Q96IY4 423 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 CCDC113Q9H0I3 377 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 TMEM134Q9H6X4 195 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 OLFML3Q9NRN5 406 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 RMND1Q9NWS8 449 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 PCDHA5Q9Y5H7 936 aa16.46■□□□□ 0.23
NUP54-213ENST00000513352 ZBBXA8MT70 800 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 BIN1O00499 593 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 TSPAN1O60635 241 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 FGBP02675 491 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 ZSCAN20P17040 1043 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms