RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 WDR17Q8IZU2 1322 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 COPB1P53618 953 aaKnown RBP11.79□□□□□ -0.52
MSH6-201ENST00000234420 LRRC14Q15048 493 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 KRT31Q15323 416 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 C10orf76Q5T2E6 689 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 PODNQ7Z5L7 613 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 NACC1Q96RE7 527 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 RRAGCQ9HB90 399 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 DONSONQ9NYP3 566 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 KIAA1024Q9UPX6 916 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 MYO1FO00160 1098 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 AP3B1O00203 1094 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 SNX2O60749 519 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 ALDH1A1P00352 501 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 PYROXD1Q8WU10 500 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 CHAMP1Q96JM3 812 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 SEPT5Q99719 369 aaPredicted RBP11.79□□□□□ -0.52
MSH6-201ENST00000234420 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.79□□□□□ -0.527e-7■■□□□ 13.6
MSH6-201ENST00000234420 SELENONQ9NZV5 590 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 DCDC2Q9UHG0 476 aa11.79□□□□□ -0.52
MSH6-201ENST00000234420 DNALI1O14645 258 aaPredicted RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 SNUPNO95149 360 aaKnown RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 CYP2B6P20813 491 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 EFTUD2Q15029 972 aaKnown RBP eCLIP11.78□□□□□ -0.522e-7■■■□□ 17.5
MSH6-201ENST00000234420 BBS9Q3SYG4 887 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 GALNT4Q8N4A0 578 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 TGS1Q96RS0 853 aaKnown RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 PRR12Q9ULL5 1215 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CHEK2O96017 543 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CSE1LP55060 971 aaKnown RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 DR1Q01658 176 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 KIAA1755Q5JYT7 1200 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 SRRM1Q8IYB3 904 aaKnown RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 ARPP21Q9UBL0 812 aaPredicted RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 PTPN23Q9H3S7 1636 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ACADMP11310 421 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CDC25BP30305 580 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 LRRC74AQ0VAA2 488 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ITPRIPL1Q6GPH6 555 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ACAD11Q709F0 780 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 UNC45BQ8IWX7 931 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 MYOCDQ8IZQ8 938 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ARMCX3Q9UH62 379 aaPredicted RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 ZNF263O14978 683 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 AP1G2O75843 785 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 PGM1P36871 562 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 SPATA2Q9UM82 520 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ST8SIA6P61647 398 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 PPARAQ07869 468 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 ITGB3BPQ13352 177 aaPredicted RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 TNNI3KQ59H18 835 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 KRT40Q6A162 431 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CLMNQ96JQ2 1002 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CCT7Q99832 543 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 DBNDD2Q9BQY9 259 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 PARVGQ9HBI0 331 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 GTSE1Q9NYZ3 720 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 MROH5Q6ZUA9 1318 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 FAM196BA6NMK8 535 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 COPEO14579 308 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 GSNP06396 782 aa11.78□□□□□ -0.52
MSH6-201ENST00000234420 CLK1P49759 484 aaKnown RBP11.78□□□□□ -0.52
MSH6-201ENST00000234420 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.77□□□□□ -0.52
MSH6-201ENST00000234420 CHRNDQ07001 517 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 TRIM32Q13049 653 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 DEFB128Q7Z7B8 93 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 ZBTB18Q99592 522 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 CD248Q9HCU0 757 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 ZNF804BA4D1E1 1349 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 LRRIQ3A6PVS8 624 aaPredicted RBP11.77□□□□□ -0.52
MSH6-201ENST00000234420 KLRF2D3W0D1 207 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 MAPK4P31152 587 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 STX3Q13277 289 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 UBE2SQ16763 222 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 CYFIP1Q7L576 1253 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 ARL8AQ96BM9 186 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 EGFL8Q99944 293 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 EHBP1L1Q8N3D4 1523 aa11.77□□□□□ -0.52
MSH6-201ENST00000234420 USP14P54578 494 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 USE1Q9NZ43 259 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 ZNF233A6NK53 670 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 RASSF9O75901 435 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 IFNA8P32881 189 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 KPNA2P52292 529 aaKnown RBP11.77□□□□□ -0.53
MSH6-201ENST00000234420 PPP2R2AP63151 447 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 BFSP2Q13515 415 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 AKIRIN2Q53H80 203 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 SPATA1Q5VX52 437 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 SLFN12Q8IYM2 578 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 NLGN1Q8N2Q7 840 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 NFKBIZQ9BYH8 718 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 EXOSC4Q9NPD3 245 aaKnown RBP11.77□□□□□ -0.53
MSH6-201ENST00000234420 UHRF1BP1LA0JNW5 1464 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 CASKIN1Q8WXD9 1431 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 A0A087WWV3 80 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 EGFRP00533 1210 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 LCP1P13796 627 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 NDUFA8P51970 172 aa11.77□□□□□ -0.53
MSH6-201ENST00000234420 RUNX1T1Q06455 604 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms