RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	YNL140C	P53910	189 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	TGL2	P54857	326 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	TIM44	Q01852	431 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YPL068C	Q02749	293 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	TRM82	Q03774	444 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	EMI1	Q04406	187 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MLC2	Q06580	163 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	ZEO1	Q08245	113 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MLH3	Q12083	715 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YOL107W	Q12239	342 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	RGT2	Q12300	763 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	SNF8	Q12483	233 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	PEP4	P07267	405 aa	Known RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	SPS2	P08459	502 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	HOP1	P20050	605 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	FPR1	P20081	114 aa	Known RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	TAH1	P25638	111 aa	Predicted RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	ARO7	P32178	256 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	NTH1	P32356	751 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	HXT4	P32467	576 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	SEC17	P32602	292 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	ZRT3	P34240	503 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	SNU114	P36048	1008 aa	Known RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	YHR033W	P38690	423 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	INM1	P38710	295 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	FMP52	P40008	231 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	YMR144W	P40214	342 aa	Known RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	NDE1	P40215	560 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	GDS1	P41913	522 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	LOH1	P47055	219 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	TAF4	P50105	388 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	MTL1	P53214	551 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	POP6	P53218	158 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	RTS3	P53289	263 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	YAP1802	P53309	568 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	GIP3	Q03016	1276 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	PRM15	Q03262	622 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	FRE3	Q08905	711 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	NMD4	Q12129	218 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	YKL033W-A	Q86ZR7	236 aa		4.11	□□□□□ -1.75
CDC42	YLR229C	HRP1	Q99383	534 aa	Known RBP	4.11	□□□□□ -1.75
CDC42	YLR229C	YGL041W-A	P0C5N3	154 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YKR104W	P0CE69	306 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	PET54	P10834	293 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	UNG1	P12887	359 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	NCP1	P16603	691 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	YSR3	P23501	404 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	RER1	P25560	188 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	PMT2	P31382	759 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	KRE6	P32486	720 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	SPO23	P33757	523 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	LOT5	P34234	306 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	CBT1	P36038	271 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	ATP3	P38077	311 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	FAT1	P38225	669 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	LEU5	P38702	357 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
CDC42	YLR229C	YHR035W	P38769	630 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	RRF1	P38771	230 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YPT35	P38815	214 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	FMO1	P38866	432 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YEL073C	P39974	107 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	GIM4	P40005	111 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	YJL218W	P40892	196 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	ARF3	P40994	183 aa	RIP-Chip data	4.1	□□□□□ -1.75	not detected
CDC42	YLR229C	BAP3	P41815	604 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	IRC7	P43623	340 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	JHD2	P47156	728 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	BPL1	P48445	690 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	UBC11	P52492	156 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	AAT1	Q01802	451 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YSA1	Q01976	231 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	GRX5	Q02784	150 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	FDC1	Q03034	503 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	NGL2	Q03264	515 aa	Known RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	YDR249C	Q03787	373 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YMR087W	Q04299	284 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	RPC11	Q04307	110 aa	Predicted RBP	4.1	□□□□□ -1.75
CDC42	YLR229C	PHO92	Q06390	306 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	ATG10	Q07879	167 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YLR040C	Q07988	224 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YOL073C	Q08232	322 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	IRC13	Q08630	104 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	TRM8	Q12009	286 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	YLR126C	Q12288	251 aa		4.1	□□□□□ -1.75
CDC42	YLR229C	UBR1	P19812	1950 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	TOM1	Q03280	3268 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	YPR096C	O13587	100 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	REP2	P03872	296 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	LEU4	P06208	619 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	RAD52	P06778	471 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	MAG1	P22134	296 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	SLM5	P25345	492 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	TRX3	P25372	127 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	AHC2	P25649	128 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	NAM9	P27929	486 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	HOM6	P31116	359 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	RNP1	P32385	249 aa		4.09	□□□□□ -1.75
CDC42	YLR229C	CAT2	P32796	670 aa	Known RBP	4.09	□□□□□ -1.75
CDC42	YLR229C	PDC2	P32896	925 aa		4.09	□□□□□ -1.75

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