RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 MTMR9Q96QG7 549 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 EIF2AK1Q9BQI3 630 aaKnown RBP19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TMEM117Q9H0C3 514 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TMEM60Q9H2L4 133 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 IGFLR1Q9H665 355 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 DHX33Q9H6R0 707 aaKnown RBP19.2■□□□□ 0.66
HMGN3-203ENST00000620514 ZSWIM4Q9H7M6 989 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TTC12Q9H892 705 aaPredicted RBP19.2■□□□□ 0.66
HMGN3-203ENST00000620514 PCDHA12Q9UN75 941 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 PCDHGC5Q9Y5F6 944 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 MUC3AQ02505 3323 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 NEMFO60524 1076 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 IL9P15248 144 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 ATF7P17544 494 aaPredicted RBP19.19■□□□□ 0.66
HMGN3-203ENST00000620514 LTBRP36941 435 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 RFC5P40937 340 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 XKR9Q5GH70 373 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 CLLU1OSQ5K130 101 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 PTCRAQ6ISU1 281 aaPredicted RBP19.19■□□□□ 0.66
HMGN3-203ENST00000620514 ADGRD2Q7Z7M1 963 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 ZNF598Q86UK7 904 aaKnown RBP19.19■□□□□ 0.66
HMGN3-203ENST00000620514 ZSCAN31Q96LW9 406 aaPredicted RBP19.19■□□□□ 0.66
HMGN3-203ENST00000620514 LLPHQ9BRT6 129 aaKnown RBP19.19■□□□□ 0.66
HMGN3-203ENST00000620514 PCDHB12Q9Y5F1 795 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 COL4A3BPQ9Y5P4 624 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 PLXNA4Q9HCM2 1894 aa19.19■□□□□ 0.66
HMGN3-203ENST00000620514 A0A0U1RQF3 1178 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 LINC01565O15544 149 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 SFPQP23246 707 aaKnown RBP eCLIP19.18■□□□□ 0.66
HMGN3-203ENST00000620514 MCM7P33993 719 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 DLX2Q07687 328 aaPredicted RBP19.18■□□□□ 0.66
HMGN3-203ENST00000620514 EMC2Q15006 297 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 SAFBQ15424 915 aaKnown RBP eCLIP19.18■□□□□ 0.66
HMGN3-203ENST00000620514 CTC1Q2NKJ3 1217 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 OTUD6AQ7L8S5 288 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 PRPF31Q8WWY3 499 aaKnown RBP19.18■□□□□ 0.66
HMGN3-203ENST00000620514 HSD17B14Q9BPX1 270 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 IFT122Q9HBG6 1241 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 AAASQ9NRG9 546 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 DACT1Q9NYF0 836 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 PPME1Q9Y570 386 aa19.18■□□□□ 0.66
HMGN3-203ENST00000620514 A0A087WWV3 80 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 HOXA2O43364 376 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 FGF18O76093 207 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 SRGAP2CP0DJJ0 459 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 PBX3P40426 434 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 RBM25P49756 843 aaKnown RBP19.17■□□□□ 0.66
HMGN3-203ENST00000620514 CATSPER4Q7RTX7 472 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 THNSL1Q8IYQ7 743 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 ABI1Q8IZP0 508 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 HELQQ8TDG4 1101 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 PSPC1Q8WXF1 523 aaKnown RBP19.17■□□□□ 0.66
HMGN3-203ENST00000620514 INO80BQ9C086 356 aaPredicted RBP19.17■□□□□ 0.66
HMGN3-203ENST00000620514 MINDY3Q9H8M7 445 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 CD320Q9NPF0 282 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 XPNPEP1Q9NQW7 623 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 CHST12Q9NRB3 414 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 SH2B1Q9NRF2 756 aaPredicted RBP19.17■□□□□ 0.66
HMGN3-203ENST00000620514 PIN4Q9Y237 131 aaKnown RBP19.17■□□□□ 0.66
HMGN3-203ENST00000620514 BDP1A6H8Y1 2624 aa19.17■□□□□ 0.66
HMGN3-203ENST00000620514 ARID2Q68CP9 1835 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 GRXCR2A6NFK2 248 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 POTEMA6NI47 508 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 NCK2O43639 380 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 EOMESO95936 686 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 LAG3P18627 525 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 PHKA2P46019 1235 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 LAMTOR4Q0VGL1 99 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 ZNF174Q15697 407 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 CLUL1Q15846 466 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 LONRF3Q496Y0 759 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 TWF2Q6IBS0 349 aaKnown RBP19.16■□□□□ 0.66
HMGN3-203ENST00000620514 EXOC8Q8IYI6 725 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 FBXO18Q8NFZ0 1043 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 LPPQ93052 612 aa19.16■□□□□ 0.66
HMGN3-203ENST00000620514 TBX10O75333 385 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 LYPLA2O95372 231 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 ERVFC1P60507 584 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 HMGN5P82970 282 aaKnown RBP19.15■□□□□ 0.66
HMGN3-203ENST00000620514 KCNT2Q6UVM3 1135 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 RBM23Q86U06 439 aaKnown RBP19.15■□□□□ 0.66
HMGN3-203ENST00000620514 FERMT3Q86UX7 667 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 FAM178BQ8IXR5 827 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 LRRC43Q8N309 656 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 FAM184AQ8NB25 1140 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 KHSRPQ92945 711 aaKnown RBP eCLIP19.15■□□□□ 0.662e-8■□□□□ 9.3
HMGN3-203ENST00000620514 MTRQ99707 1265 aa19.15■□□□□ 0.66
HMGN3-203ENST00000620514 FOXP1Q9H334 677 aaPredicted RBP19.15■□□□□ 0.66
HMGN3-203ENST00000620514 MEIS3P2A8K0S8 358 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 NRIP1P48552 1158 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 UBE3AQ05086 875 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 ADAM15Q13444 863 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 CSPP1Q1MSJ5 1256 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 PUS10Q3MIT2 529 aaKnown RBP19.14■□□□□ 0.65
HMGN3-203ENST00000620514 RNF149Q8NC42 400 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 MICAL1Q8TDZ2 1067 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 PIGOQ8TEQ8 1089 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 TCP11Q8WWU5 503 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 TRAIPQ9BWF2 469 aa19.14■□□□□ 0.65
HMGN3-203ENST00000620514 TLR9Q9NR96 1032 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms