RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MYO7AQ13402 2215 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 K7ELQ4 463 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-206ENST00000595974 LINC00271P0C7V0 271 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 FGFR4P22455 802 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 CTNNB1P35222 781 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 FAM189BP81408 668 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 LAMTOR4Q0VGL1 99 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 PDIA5Q14554 519 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 MXD4Q14582 209 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-206ENST00000595974 SRGAP1Q7Z6B7 1085 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 FERMT3Q86UX7 667 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 KSR1Q8IVT5 923 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 MICALL1Q8N3F8 863 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 IGSF22Q8N9C0 903 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 INTS4Q96HW7 963 aaKnown RBP18.05■□□□□ 0.48
TRIM28-206ENST00000595974 NACC1Q96RE7 527 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 IFT122Q9HBG6 1241 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 CHST12Q9NRB3 414 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 LRWD1Q9UFC0 647 aa18.05■□□□□ 0.48
TRIM28-206ENST00000595974 A0A0C4DFX4 3053 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 C5orf67F2Z3F1 127 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 CSDE1O75534 798 aaKnown RBP18.04■□□□□ 0.48
TRIM28-206ENST00000595974 RB1P06400 928 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 IBSPP21815 317 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-206ENST00000595974 ATP2C1P98194 919 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-206ENST00000595974 POTEGQ6S5H5 508 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 BRAPQ7Z569 592 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 PPM1EQ8WY54 764 aa18.04■□□□□ 0.48
TRIM28-206ENST00000595974 H3BNC9 293 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 HOXA2O43364 376 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 USO1O60763 962 aaKnown RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 BMPR1AP36894 532 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 CCT6AP40227 531 aaKnown RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 PHKA2P46019 1235 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 CCDC85BQ15834 202 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 PAN2Q504Q3 1202 aaKnown RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 DTHD1Q6ZMT9 781 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 CATSPER4Q7RTX7 472 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 ECHDC2Q86YB7 292 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 RNF149Q8NC42 400 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 MCPH1Q8NEM0 835 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 C11orf84Q9BUA3 381 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 TRAIPQ9BWF2 469 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 PLVAPQ9BX97 442 aa18.03■□□□□ 0.48
TRIM28-206ENST00000595974 PIN4Q9Y237 131 aaKnown RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 MRPL42Q9Y6G3 142 aaKnown RBP18.03■□□□□ 0.48
TRIM28-206ENST00000595974 A0A0U1RQF3 1178 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 VPS37CA5D8V6 355 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-206ENST00000595974 SRGAP2CP0DJJ0 459 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 GATMP50440 423 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 POU5F1BQ06416 359 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 GPM6BQ13491 265 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 TFDP1Q14186 410 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 PCBP1Q15365 356 aaKnown RBP eCLIP18.02■□□□□ 0.481e-10■■■■□ 25.2
TRIM28-206ENST00000595974 PTPROQ16827 1216 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 SNX29Q8TEQ0 813 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 AGPAT5Q9NUQ2 364 aa18.02■□□□□ 0.48
TRIM28-206ENST00000595974 PLXNA4Q9HCM2 1894 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 ARHGEF35A5YM69 484 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 TBKBP1A7MCY6 615 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 EOMESO95936 686 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 BMP15O95972 392 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 SKIP12755 728 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 ARL2P36404 184 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 RAB27AP51159 221 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 KRT79Q5XKE5 535 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 ARL6IP4Q66PJ3 421 aaKnown RBP18.01■□□□□ 0.47
TRIM28-206ENST00000595974 TWF2Q6IBS0 349 aaKnown RBP18.01■□□□□ 0.47
TRIM28-206ENST00000595974 IFNLR1Q8IU57 520 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-206ENST00000595974 P2RX5Q93086 422 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 SNX21Q969T3 373 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 MRPL38Q96DV4 380 aaKnown RBP18.01■□□□□ 0.47
TRIM28-206ENST00000595974 TMEM117Q9H0C3 514 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 POLR3FQ9H1D9 316 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-206ENST00000595974 THEGQ9P2T0 379 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 MYH15Q9Y2K3 1946 aa18.01■□□□□ 0.47
TRIM28-206ENST00000595974 MYH11P35749 1972 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 A0A087WWV3 80 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 FGFR1P11362 822 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 PTENP60484 403 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 CAPSQ13938 189 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 IL17AQ16552 155 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 TIGD5Q53EQ6 642 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 NAALADL2Q58DX5 795 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 FAM102BQ5T8I3 360 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 ZNF598Q86UK7 904 aaKnown RBP18■□□□□ 0.47
TRIM28-206ENST00000595974 ABI1Q8IZP0 508 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 ASAP3Q8TDY4 903 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 RSPH1Q8WYR4 309 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 NFKBIZQ9BYH8 718 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 LMAN2LQ9H0V9 348 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 MINDY3Q9H8M7 445 aa18■□□□□ 0.47
TRIM28-206ENST00000595974 ERLIN2O94905 339 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 ATF7P17544 494 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-206ENST00000595974 GLRA2P23416 452 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 ECM1Q16610 540 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 PADI6Q6TGC4 694 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 LRRC43Q8N309 656 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 RNF169Q8NCN4 708 aa17.99■□□□□ 0.47
TRIM28-206ENST00000595974 PRDM6Q9NQX0 595 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms