RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 RFC5P40937 340 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 POLGP54098 1239 aaPredicted RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 SMAD3P84022 425 aaKnown RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 MCM6Q14566 821 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 ZRSR1Q15695 479 aaKnown RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 UBXN11Q5T124 520 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 TAS1R3Q7RTX0 852 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 SEPT8Q92599 483 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 TOP1MTQ969P6 601 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 NLRP4Q96MN2 994 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 GUCD1Q96NT3 240 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 CCSER1Q9C0I3 900 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 POLR3FQ9H1D9 316 aaPredicted RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 GDPD2Q9HCC8 539 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 TSHZ2Q9NRE2 1034 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 RCOR1Q9UKL0 485 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 PCDHA7Q9UN72 937 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 SLC4A7Q9Y6M7 1214 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 SQORQ9Y6N5 450 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 MYO7AQ13402 2215 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 SFI1A8K8P3 1242 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 C9IYK1 514 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 RFXAPO00287 272 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 SPTLC2O15270 562 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 DKC1O60832 514 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS35-206ENST00000565228 RPS6KA5O75582 802 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 BAIAP3O94812 1187 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 GJB5O95377 273 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 PARNO95453 639 aaKnown RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 MUTP22033 750 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 DNAJB2P25686 324 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 PTENP60484 403 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 HTRA4P83105 476 aaPredicted RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 MBTD1Q05BQ5 628 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 RAD51AP2Q09MP3 1159 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 NFX1Q12986 1120 aaKnown RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 IKBKEQ14164 716 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 E2F4Q16254 413 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 KRT79Q5XKE5 535 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 HAUS3Q68CZ6 603 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 OTUD6AQ7L8S5 288 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 RSPH3Q86UC2 560 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 SYT2Q8N9I0 419 aaPredicted RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 ERMNQ8TAM6 284 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 TNPO1Q92973 898 aaKnown RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 FAM161BQ96MY7 647 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 FIZ1Q96SL8 496 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 PANK2Q9BZ23 570 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 CXCL16Q9H2A7 254 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 TSPYL2Q9H2G4 693 aaPredicted RBP10.25□□□□□ -0.77
VPS35-206ENST00000565228 ATP6V0A4Q9HBG4 840 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 NLRC5Q86WI3 1866 aa10.25□□□□□ -0.77
VPS35-206ENST00000565228 HIP1RO75146 1068 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 UPP2O95045 317 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 YEATS4O95619 227 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 CA3P07451 260 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 PLA2G4BP0C869 781 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 AFF1P51825 1210 aaKnown RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 FAM189BP81408 668 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 PAK2Q13177 524 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 GRIN2CQ14957 1233 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 FAM102BQ5T8I3 360 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 ZNF598Q86UK7 904 aaKnown RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 CDR2LQ86X02 465 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 IFNLR1Q8IU57 520 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 MYOCDQ8IZQ8 938 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 KRI1Q8N9T8 703 aaKnown RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 RNF149Q8NC42 400 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 LEO1Q8WVC0 666 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 NLRP7Q8WX94 980 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 PSPC1Q8WXF1 523 aaKnown RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 SLC7A3Q8WY07 619 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 RAD54LQ92698 747 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 ZNF689Q96CS4 500 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 AK8Q96MA6 479 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 MAP7D2Q96T17 732 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 SLC9A7Q96T83 725 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 ADAM2Q99965 735 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 COL25A1Q9BXS0 654 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 CCDC113Q9H0I3 377 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 SEMA6BQ9H3T3 888 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 RGS18Q9NS28 235 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 PPME1Q9Y570 386 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 TRIP11Q15643 1979 aa10.24□□□□□ -0.77
VPS35-206ENST00000565228 COL4A4P53420 1690 aaPredicted RBP10.24□□□□□ -0.77
VPS35-206ENST00000565228 ARHGEF35A5YM69 484 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 MYMKA6NI61 221 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 M0QZ92 97 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 MEFVO15553 781 aaPredicted RBP10.23□□□□□ -0.77
VPS35-206ENST00000565228 B4GALT3O60512 393 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 TSPAN1O60635 241 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 PPP6R2O75170 966 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 BMP15O95972 392 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 FGFR1P11362 822 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 ACTN1P12814 892 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 TMOD1P28289 359 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 CASP1P29466 404 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 TAP1Q03518 808 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 ADGRE1Q14246 886 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 DHX8Q14562 1220 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms