RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NT5C1B-RDH14C9J2C7 533 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 CTSAP10619 480 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 AOC1P19801 751 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 RFX1P22670 979 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 GPC3P51654 580 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 RNASELQ05823 741 aaKnown RBP19.11■□□□□ 0.65
VPS29-204ENST00000548259 TBC1D8BQ0IIM8 1120 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 NONOQ15233 471 aaKnown RBP eCLIP19.11■□□□□ 0.65
VPS29-204ENST00000548259 CREB3L3Q68CJ9 461 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 DDX53Q86TM3 631 aaKnown RBP19.11■□□□□ 0.65
VPS29-204ENST00000548259 LRRC71Q8N4P6 559 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 SEMA4AQ9H3S1 761 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 C6orf50Q9HD87 102 aa19.11■□□□□ 0.65
VPS29-204ENST00000548259 IGLV3-22A0A075B6J6 115 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 OATP04181 439 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 SFPQP23246 707 aaKnown RBP eCLIP19.1■□□□□ 0.65
VPS29-204ENST00000548259 DNM2P50570 870 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 TMC5Q6UXY8 1006 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 ZNF598Q86UK7 904 aaKnown RBP19.1■□□□□ 0.65
VPS29-204ENST00000548259 REXO1Q8N1G1 1221 aaKnown RBP19.1■□□□□ 0.65
VPS29-204ENST00000548259 INO80BQ9C086 356 aaPredicted RBP19.1■□□□□ 0.65
VPS29-204ENST00000548259 SMOC2Q9H3U7 446 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 LOXHD1Q8IVV2 1947 aa19.1■□□□□ 0.65
VPS29-204ENST00000548259 MYO15AQ9UKN7 3530 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 CCDC196A0A1B0GTZ2 297 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 STK25O00506 426 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 EPCAMP16422 314 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 GNA11P29992 359 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 ANGPT1Q15389 498 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 PRR16Q569H4 304 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 TWF2Q6IBS0 349 aaKnown RBP19.09■□□□□ 0.65
VPS29-204ENST00000548259 GPR149Q86SP6 731 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 CCDC105Q8IYK2 499 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 LINC01465Q8N7H1 131 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 KCNG4Q8TDN1 519 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 IGSF21Q96ID5 467 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 LSG1Q9H089 658 aaKnown RBP19.09■□□□□ 0.65
VPS29-204ENST00000548259 IGSF9Q9P2J2 1179 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 DPP7Q9UHL4 492 aa19.09■□□□□ 0.65
VPS29-204ENST00000548259 GOLGA8AA7E2F4 631 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 GOLGA8BA8MQT2 603 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 KLRC2P26717 231 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 PHKA2P46019 1235 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 RAB27AP51159 221 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 PRKCEQ02156 737 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 NOMO2Q5JPE7 1267 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 DTWD2Q8NBA8 298 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 BICD2Q8TD16 824 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 SLC22A17Q8WUG5 538 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 ZNF668Q96K58 619 aaPredicted RBP19.08■□□□□ 0.64
VPS29-204ENST00000548259 TRAIPQ9BWF2 469 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 ANO2Q9NQ90 1003 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 DISC1Q9NRI5 854 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 DUSP12Q9UNI6 340 aa19.08■□□□□ 0.64
VPS29-204ENST00000548259 ESYT2A0FGR8 921 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 SFNP31947 248 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 JAK3P52333 1124 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 RCAN1P53805 252 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 FUT2Q10981 343 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 NECTIN1Q15223 517 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 CWF19L1Q69YN2 538 aaKnown RBP19.07■□□□□ 0.64
VPS29-204ENST00000548259 C15orf39Q6ZRI6 1047 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 SIX5Q8N196 739 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 URGCPQ8TCY9 931 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 CRYGNQ8WXF5 182 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 AUTS2Q8WXX7 1259 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 PGBD4Q96DM1 585 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 NAP1L2Q9ULW6 460 aaPredicted RBP19.07■□□□□ 0.64
VPS29-204ENST00000548259 PLXNA3P51805 1871 aa19.07■□□□□ 0.64
VPS29-204ENST00000548259 GALTP07902 379 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 FGFR4P22455 802 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 FGD1P98174 961 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 PFKFB3Q16875 520 aaPredicted RBP19.06■□□□□ 0.64
VPS29-204ENST00000548259 STAMQ92783 540 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 ZMYND12Q9H0C1 365 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 KCNK12Q9HB15 430 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 PIN4Q9Y237 131 aaKnown RBP19.06■□□□□ 0.64
VPS29-204ENST00000548259 SSX2IPQ9Y2D8 614 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 INPP5FQ9Y2H2 1132 aa19.06■□□□□ 0.64
VPS29-204ENST00000548259 GVINP1Q7Z2Y8 2422 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 GAS7O60861 476 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 LMNAP02545 664 aaKnown RBP19.05■□□□□ 0.64
VPS29-204ENST00000548259 CIITAP33076 1130 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 AKAP17AQ02040 695 aaKnown RBP19.05■□□□□ 0.64
VPS29-204ENST00000548259 LETM2Q2VYF4 491 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 KANK3Q6NY19 840 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 CYP26C1Q6V0L0 522 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 DHX32Q7L7V1 743 aaKnown RBP19.05■□□□□ 0.64
VPS29-204ENST00000548259 ZNF410Q86VK4 478 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 FAM193BQ96PV7 902 aaPredicted RBP19.05■□□□□ 0.64
VPS29-204ENST00000548259 RIT2Q99578 217 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 ESYT1Q9BSJ8 1104 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 GBP3Q9H0R5 595 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 NRDE2Q9H7Z3 1164 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 MRPL17Q9NRX2 175 aaKnown RBP19.05■□□□□ 0.64
VPS29-204ENST00000548259 TBC1D13Q9NVG8 400 aa19.05■□□□□ 0.64
VPS29-204ENST00000548259 KLF18A0A0U1RQI7 1052 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 ZNF862O60290 1169 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 PTPN14Q15678 1187 aa19.04■□□□□ 0.64
VPS29-204ENST00000548259 ZC3H14Q6PJT7 736 aaKnown RBP19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 198.7 ms