RNA–Protein interactions for RNA: ENST00000492650.1

VPS36-205, Transcript of vacuolar protein sorting 36 homolog, human

TSL 5

Gene VPS36, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS36-205	ENST00000492650	DPT	Q07507	201 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	SQSTM1	Q13501	440 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	EPHA7	Q15375	998 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	ELAVL1	Q15717	326 aa	Known RBP	4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	CFAP100	Q494V2	611 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	FNDC7	Q5VTL7	733 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	SH3TC2	Q8TF17	1288 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	NKD2	Q969F2	451 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	CEP89	Q96ST8	783 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	TCF25	Q9BQ70	676 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	SLC2A4RG	Q9NR83	387 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	C11orf21	Q9P2W6	132 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	NCDN	Q9UBB6	729 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	B4GALT6	Q9UBX8	382 aa		4.87	□□□□□ -1.63
VPS36-205	ENST00000492650	TOX4	O94842	621 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ASMTL	O95671	621 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	SDS	P20132	328 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	SCNN1G	P51170	649 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	MYBPC3	Q14896	1274 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	GAGE13	Q4V321	117 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	FKBP15	Q5T1M5	1219 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	TIGD7	Q6NT04	549 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS36-205	ENST00000492650		Q6ZRM9	215 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ZNF662	Q6ZS27	426 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	BMP8A	Q7Z5Y6	402 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	AMER2	Q8N7J2	671 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	C7orf31	Q8N865	590 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ARL8A	Q96BM9	186 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	CLIP3	Q96DZ5	547 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	PUS7	Q96PZ0	661 aa	Known RBP	4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ELF4	Q99607	663 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	IKZF4	Q9H2S9	585 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ZSWIM4	Q9H7M6	989 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	KANSL2	Q9H9L4	492 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	IL23A	Q9NPF7	189 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	ZKSCAN5	Q9Y2L8	839 aa		4.86	□□□□□ -1.63
VPS36-205	ENST00000492650	CBX4	O00257	560 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	MAFG	O15525	162 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	HNRNPL	P14866	589 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	CDK11B	P21127	795 aa	Known RBP	4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	MAN2A2	P49641	1150 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	INHBC	P55103	352 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	ADCY2	Q08462	1091 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	ADCY1	Q08828	1119 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	CLEC14A	Q86T13	490 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	PHYKPL	Q8IUZ5	450 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	SREK1	Q8WXA9	508 aa	Known RBP	4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	LARP4B	Q92615	738 aa	Known RBP	4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	GPR87	Q9BY21	358 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	TOMM22	Q9NS69	142 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650	IFT57	Q9NWB7	429 aa		4.85	□□□□□ -1.63
VPS36-205	ENST00000492650		A0A087X1B8	175 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	MFAP3L	O75121	409 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	RPS6KA4	O75676	772 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	PRPF6	O94906	941 aa	Known RBP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	JUN	P05412	331 aa	Known RBP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	VSIG10L2	P0DP72	767 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	ADAM8	P78325	824 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	PABPC4	Q13310	644 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	RTF1	Q92541	710 aa	Known RBP	4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	MYL10	Q9BUA6	226 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	POFUT1	Q9H488	388 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	MTG2	Q9H4K7	406 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	OXSM	Q9NWU1	459 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	SPO11	Q9Y5K1	396 aa		4.84	□□□□□ -1.63
VPS36-205	ENST00000492650	XDH	P47989	1333 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	PEX11B	O96011	259 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	KIR2DL3	P43628	341 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	NEK4	P51957	841 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	NPEPPS	P55786	919 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	SMAD3	P84022	425 aa	Known RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	ESRP1	Q6NXG1	681 aa	Known RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	UNQ6494/PRO21346	Q6UXR6	183 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	CMTM4	Q8IZR5	234 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	MB21D1	Q8N884	522 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	PGBD4	Q96DM1	585 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	ZNF512	Q96ME7	567 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	UIMC1	Q96RL1	719 aa		4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	NOL10	Q9BSC4	688 aa	Known RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	C14orf93	Q9H972	538 aa	Known RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	H2AFY2	Q9P0M6	372 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS36-205	ENST00000492650		A0A0A6YYJ9	748 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	EIF5B	O60841	1220 aa	Known RBP	4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	GAS7	O60861	476 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	OPHN1	O60890	802 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	FAM20B	O75063	409 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	RFPL3	O75679	317 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	INHBE	P58166	350 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	SMN1	Q16637	294 aa	Known RBP	4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	MAN2A1	Q16706	1144 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	C21orf62-AS1	Q17RA5	79 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	MFSD5	Q6N075	450 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	KIAA1841	Q6NSI8	718 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	ZNF627	Q7L945	461 aa		4.82	□□□□□ -1.64
VPS36-205	ENST00000492650	KANSL1	Q7Z3B3	1105 aa		4.82	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms