RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 METTL13Q8N6R0 699 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 LINC01465Q8N7H1 131 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 ASAP3Q8TDY4 903 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 PSPC1Q8WXF1 523 aaKnown RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 TSEN34Q9BSV6 310 aaKnown RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 PAK6Q9NQU5 681 aaPredicted RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 CCDC169A6NNP5 214 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 PRPF6O94906 941 aaKnown RBP25.36■■□□□ 1.65
CPSF4-204ENST00000436336 TMOD1P28289 359 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 MRE11P49959 708 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 HAUS6Q7Z4H7 955 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 C7orf31Q8N865 590 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 ARRDC4Q8NCT1 418 aa25.36■■□□□ 1.65
CPSF4-204ENST00000436336 MOXD2PA6NHM9 499 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 H0YCG3 227 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 SLC16A4O15374 487 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 CABYRO75952 493 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 ABCD1P33897 745 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 GTF2BQ00403 316 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 ZC2HC1CQ53FD0 456 aaPredicted RBP25.35■■□□□ 1.65
CPSF4-204ENST00000436336 SPATA1Q5VX52 437 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 FOXR2Q6PJQ5 311 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 PRPF31Q8WWY3 499 aaKnown RBP25.35■■□□□ 1.65
CPSF4-204ENST00000436336 SEMA6BQ9H3T3 888 aa25.35■■□□□ 1.65
CPSF4-204ENST00000436336 SUCLA2Q9P2R7 463 aaPredicted RBP25.35■■□□□ 1.65
CPSF4-204ENST00000436336 ASAP2O43150 1006 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 GNAT1P11488 350 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 SCP2P22307 547 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 HOXC8P31273 242 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 TPM4P67936 248 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 ADAM17P78536 824 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 MTFR1Q15390 333 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 KNOP1Q1ED39 458 aaKnown RBP25.34■■□□□ 1.65
CPSF4-204ENST00000436336 NFRKBQ6P4R8 1299 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 NELFCDQ8IXH7 590 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 TMEM161BQ8NDZ6 487 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 KCNN1Q92952 543 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 HVCN1Q96D96 273 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 ZBTB10Q96DT7 871 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 HDAC6Q9UBN7 1215 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 C17orf102A2RUQ5 167 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 MBLAC1A4D2B0 266 aaPredicted RBP25.34■■□□□ 1.65
CPSF4-204ENST00000436336 TRIM49BA6NDI0 452 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 CCL5P13501 91 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 CLCN3P51790 818 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 ACLYP53396 1101 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 PMS1P54277 932 aaKnown RBP25.34■■□□□ 1.65
CPSF4-204ENST00000436336 LRRC63Q05C16 580 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 NBPF20Q3BBV1 942 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 TTI2Q6NXR4 508 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 KCTD10Q9H3F6 313 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 NFE2L3Q9Y4A8 694 aa25.34■■□□□ 1.65
CPSF4-204ENST00000436336 HOXD13P35453 343 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 LAMTOR4Q0VGL1 99 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 CAPSQ13938 189 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 ANKRD40Q6AI12 368 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 TSG101Q99816 390 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 RNF208Q9H0X6 261 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 ARHGAP28Q9P2N2 729 aa25.33■■□□□ 1.65
CPSF4-204ENST00000436336 TPD52L1Q16890 204 aaPredicted RBP25.32■■□□□ 1.64
CPSF4-204ENST00000436336 PPP1R13LQ8WUF5 828 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 KIFC3Q9BVG8 833 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 TMEM206Q9H813 350 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 ADGRA3Q8IWK6 1321 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 SMIM35A0A1B0GVV1 85 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 DENND3A2RUS2 1198 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 LRRIQ4A6NIV6 560 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 KCNA1Q09470 495 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 TFDP1Q14186 410 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 HIC1Q14526 733 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 ZCWPW2Q504Y3 356 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 PPP4R3CPQ6ZMV5 832 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 SESTD1Q86VW0 696 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 RHPN2Q8IUC4 686 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 DEPTORQ8TB45 409 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 ACCSQ96QU6 501 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 MAP7D2Q96T17 732 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 GTF2IRD1Q9UHL9 959 aa25.32■■□□□ 1.64
CPSF4-204ENST00000436336 PDXKO00764 312 aa25.31■■□□□ 1.64
CPSF4-204ENST00000436336 DEFB118Q96PH6 123 aa25.31■■□□□ 1.64
CPSF4-204ENST00000436336 TYW1Q9NV66 732 aaKnown RBP25.31■■□□□ 1.64
CPSF4-204ENST00000436336 FANCLQ9NW38 375 aa25.31■■□□□ 1.64
CPSF4-204ENST00000436336 TRAF3IP3Q9Y228 551 aa25.31■■□□□ 1.64
CPSF4-204ENST00000436336 AKT3Q9Y243 479 aa25.31■■□□□ 1.64
CPSF4-204ENST00000436336 ZMYM2Q9UBW7 1377 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 MYCP01106 439 aaPredicted RBP25.3■■□□□ 1.64
CPSF4-204ENST00000436336 CYP2C9P11712 490 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 KSR1Q8IVT5 923 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 ZNF333Q96JL9 665 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 GLT1D1Q96MS3 346 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 DUSP9Q99956 384 aaKnown RBP25.3■■□□□ 1.64
CPSF4-204ENST00000436336 HSD3B7Q9H2F3 369 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 TBX20Q9UMR3 447 aa25.3■■□□□ 1.64
CPSF4-204ENST00000436336 KBTBD13C9JR72 458 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 TREHO43280 583 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 POU5F1BQ06416 359 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 MAP4K3Q8IVH8 894 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 KIAA0319LQ8IZA0 1049 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 RNF149Q8NC42 400 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 ARMC5Q96C12 935 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms