RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MYBBP1AQ9BQG0 1328 aaKnown RBP14.37□□□□□ -0.11
CLIP1-213ENST00000540338 NLRP13Q86W25 1043 aa14.37□□□□□ -0.11
CLIP1-213ENST00000540338 NBPF1Q3BBV0 1214 aa14.36□□□□□ -0.11
CLIP1-213ENST00000540338 CCDC184Q52MB2 194 aa14.35□□□□□ -0.11
CLIP1-213ENST00000540338 PLCH2O75038 1416 aa14.35□□□□□ -0.11
CLIP1-213ENST00000540338 ESF1Q9H501 851 aaKnown RBP14.35□□□□□ -0.11
CLIP1-213ENST00000540338 ABCC2Q92887 1545 aa14.34□□□□□ -0.11
CLIP1-213ENST00000540338 SYCP2Q9BX26 1530 aa14.34□□□□□ -0.11
CLIP1-213ENST00000540338 PANK3Q9H999 370 aa14.34□□□□□ -0.11
CLIP1-213ENST00000540338 TEX14Q8IWB6 1497 aa14.34□□□□□ -0.11
CLIP1-213ENST00000540338 EIF3AQ14152 1382 aaKnown RBP14.33□□□□□ -0.12
CLIP1-213ENST00000540338 SCAPERQ9BY12 1400 aa14.32□□□□□ -0.12
CLIP1-213ENST00000540338 WASHC2CQ9Y4E1 1318 aa14.32□□□□□ -0.12
CLIP1-213ENST00000540338 NUDCQ9Y266 331 aa14.32□□□□□ -0.12
CLIP1-213ENST00000540338 ADGBQ8N7X0 1667 aa14.3□□□□□ -0.12
CLIP1-213ENST00000540338 TSHZ2Q9NRE2 1034 aa14.3□□□□□ -0.12
CLIP1-213ENST00000540338 MBD5Q9P267 1494 aa14.29□□□□□ -0.12
CLIP1-213ENST00000540338 B4GALNT3Q6L9W6 998 aa14.29□□□□□ -0.12
CLIP1-213ENST00000540338 FAM135AQ9P2D6 1515 aa14.29□□□□□ -0.12
CLIP1-213ENST00000540338 DENND4BO75064 1496 aaPredicted RBP14.29□□□□□ -0.12
CLIP1-213ENST00000540338 ADCY10Q96PN6 1610 aa14.28□□□□□ -0.12
CLIP1-213ENST00000540338 ARHGEF5Q12774 1597 aa14.28□□□□□ -0.12
CLIP1-213ENST00000540338 SENP3Q9H4L4 574 aaPredicted RBP14.27□□□□□ -0.12
CLIP1-213ENST00000540338 RALGAPBQ86X10 1494 aa14.27□□□□□ -0.12
CLIP1-213ENST00000540338 DUOX2Q9NRD8 1548 aa14.27□□□□□ -0.12
CLIP1-213ENST00000540338 BRD4O60885 1362 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-213ENST00000540338 ERBINQ96RT1 1412 aa14.26□□□□□ -0.13
CLIP1-213ENST00000540338 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.25□□□□□ -0.13
CLIP1-213ENST00000540338 TRAPPC8Q9Y2L5 1435 aa14.25□□□□□ -0.13
CLIP1-213ENST00000540338 ARHGEF12Q9NZN5 1544 aa14.25□□□□□ -0.13
CLIP1-213ENST00000540338 FANCAO15360 1455 aa14.24□□□□□ -0.13
CLIP1-213ENST00000540338 CANXP27824 592 aaKnown RBP14.24□□□□□ -0.13
CLIP1-213ENST00000540338 CYB5RLQ6IPT4 315 aa14.24□□□□□ -0.13
CLIP1-213ENST00000540338 CHD1O14646 1710 aa14.24□□□□□ -0.13
CLIP1-213ENST00000540338 ADGRL1O94910 1474 aa14.24□□□□□ -0.13
CLIP1-213ENST00000540338 UHRF1BP1Q6BDS2 1440 aa14.24□□□□□ -0.13
CLIP1-213ENST00000540338 PNISRQ8TF01 805 aaKnown RBP14.24□□□□□ -0.13
CLIP1-213ENST00000540338 PDE3BQ13370 1112 aa14.23□□□□□ -0.13
CLIP1-213ENST00000540338 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLIP1-213ENST00000540338 SPATA31E1Q6ZUB1 1445 aa14.22□□□□□ -0.13
CLIP1-213ENST00000540338 WDR7Q9Y4E6 1490 aa14.22□□□□□ -0.13
CLIP1-213ENST00000540338 SAMD9LQ8IVG5 1584 aa14.21□□□□□ -0.13
CLIP1-213ENST00000540338 CDC42BPAQ5VT25 1732 aa14.21□□□□□ -0.13
CLIP1-213ENST00000540338 RCAN3Q9UKA8 241 aa14.21□□□□□ -0.13
CLIP1-213ENST00000540338 TRAK1Q9UPV9 953 aa14.21□□□□□ -0.13
CLIP1-213ENST00000540338 CFAP53Q96M91 514 aa14.21□□□□□ -0.14
CLIP1-213ENST00000540338 PRAG1Q86YV5 1406 aa14.2□□□□□ -0.14
CLIP1-213ENST00000540338 CFAP70Q5T0N1 1121 aa14.2□□□□□ -0.14
CLIP1-213ENST00000540338 RBM19Q9Y4C8 960 aaKnown RBP14.2□□□□□ -0.14
CLIP1-213ENST00000540338 NEFMP07197 916 aa14.2□□□□□ -0.14
CLIP1-213ENST00000540338 POGKQ9P215 609 aa14.2□□□□□ -0.14
CLIP1-213ENST00000540338 UHRF1BP1LA0JNW5 1464 aa14.19□□□□□ -0.14
CLIP1-213ENST00000540338 DHX29Q7Z478 1369 aaKnown RBP14.19□□□□□ -0.14
CLIP1-213ENST00000540338 CD109Q6YHK3 1445 aa14.19□□□□□ -0.14
CLIP1-213ENST00000540338 KDM5BQ9UGL1 1544 aa14.19□□□□□ -0.14
CLIP1-213ENST00000540338 MORC1Q86VD1 984 aa14.19□□□□□ -0.14
CLIP1-213ENST00000540338 VGFO15240 615 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-213ENST00000540338 ANP32AP39687 249 aaKnown RBP14.18□□□□□ -0.14
CLIP1-213ENST00000540338 TNNT2P45379 298 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-213ENST00000540338 RTEL1-TNFRSF6BF6WH68 1400 aa14.18□□□□□ -0.14
CLIP1-213ENST00000540338 ASXL2Q76L83 1435 aa14.18□□□□□ -0.14
CLIP1-213ENST00000540338 DAXXQ9UER7 740 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-213ENST00000540338 PREX2Q70Z35 1606 aa14.18□□□□□ -0.14
CLIP1-213ENST00000540338 NUTM2DQ5VT03 806 aaPredicted RBP14.17□□□□□ -0.14
CLIP1-213ENST00000540338 ERCC6L2Q5T890 1561 aa14.17□□□□□ -0.14
CLIP1-213ENST00000540338 TTC37Q6PGP7 1564 aa14.16□□□□□ -0.14
CLIP1-213ENST00000540338 SAFB2Q14151 953 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLIP1-213ENST00000540338 STK26Q9P289 416 aa14.16□□□□□ -0.14
CLIP1-213ENST00000540338 MLECQ14165 292 aa14.15□□□□□ -0.14
CLIP1-213ENST00000540338 RAPGEF3O95398 923 aa14.15□□□□□ -0.14
CLIP1-213ENST00000540338 SRPK2P78362 688 aaKnown RBP14.15□□□□□ -0.14
CLIP1-213ENST00000540338 CENPJQ9HC77 1338 aaPredicted RBP14.14□□□□□ -0.15
CLIP1-213ENST00000540338 MYO5CQ9NQX4 1742 aa14.14□□□□□ -0.15
CLIP1-213ENST00000540338 KDM5DQ9BY66 1539 aa14.14□□□□□ -0.15
CLIP1-213ENST00000540338 CROCC2H7BZ55 1655 aa14.13□□□□□ -0.15
CLIP1-213ENST00000540338 FAM69CQ0P6D2 419 aa14.13□□□□□ -0.15
CLIP1-213ENST00000540338 SMG6Q86US8 1419 aaKnown RBP14.12□□□□□ -0.15
CLIP1-213ENST00000540338 NEUROD2Q15784 382 aa14.12□□□□□ -0.15
CLIP1-213ENST00000540338 A2MP01023 1474 aa14.11□□□□□ -0.15
CLIP1-213ENST00000540338 DISP3Q9P2K9 1392 aa14.11□□□□□ -0.15
CLIP1-213ENST00000540338 GOLGA2Q08379 1002 aa14.1□□□□□ -0.15
CLIP1-213ENST00000540338 TESK2Q96S53 571 aa14.1□□□□□ -0.15
CLIP1-213ENST00000540338 PPP2R1AP30153 589 aa14.1□□□□□ -0.15
CLIP1-213ENST00000540338 NPM2Q86SE8 214 aaKnown RBP14.1□□□□□ -0.15
CLIP1-213ENST00000540338 TMEM132EQ6IEE7 984 aa14.09□□□□□ -0.15
CLIP1-213ENST00000540338 RRP1P56182 461 aaKnown RBP14.09□□□□□ -0.15
CLIP1-213ENST00000540338 EVC2Q86UK5 1308 aa14.09□□□□□ -0.15
CLIP1-213ENST00000540338 ZCCHC11Q5TAX3 1644 aaKnown RBP14.09□□□□□ -0.15
CLIP1-213ENST00000540338 RPGRIP1LQ68CZ1 1315 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 CCDC146Q8IYE0 955 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 ADAMTS8Q9UP79 889 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 MAST1Q9Y2H9 1570 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 SCAF11Q99590 1463 aaKnown RBP14.08□□□□□ -0.16
CLIP1-213ENST00000540338 ADGRF5Q8IZF2 1346 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 PLPPR3Q6T4P5 718 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 GPRASP1Q5JY77 1395 aa14.08□□□□□ -0.16
CLIP1-213ENST00000540338 ZNF518AQ6AHZ1 1483 aa14.07□□□□□ -0.16
CLIP1-213ENST00000540338 CDC42BPBQ9Y5S2 1711 aa14.07□□□□□ -0.16
CLIP1-213ENST00000540338 HDGFP51858 240 aaKnown RBP14.07□□□□□ -0.16
CLIP1-213ENST00000540338 ABCC1P33527 1531 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms