RNA–Protein interactions for RNA: ENST00000534412.5

PICALM-223, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-223	ENST00000534412	PTPRE	P23469	700 aa		12.22	□□□□□ -0.45
PICALM-223	ENST00000534412	BCL2L12	Q9HB09	334 aa		12.22	□□□□□ -0.45
PICALM-223	ENST00000534412	ADGRD1	Q6QNK2	874 aa		12.21	□□□□□ -0.45
PICALM-223	ENST00000534412	TK2	O00142	265 aa		12.2	□□□□□ -0.46
PICALM-223	ENST00000534412	STAC3	Q96MF2	364 aa		12.2	□□□□□ -0.46
PICALM-223	ENST00000534412	HMGXB3	Q12766	1538 aa		12.2	□□□□□ -0.46
PICALM-223	ENST00000534412	DMRTA1	Q5VZB9	504 aa		12.19	□□□□□ -0.46
PICALM-223	ENST00000534412	TSHZ2	Q9NRE2	1034 aa		12.18	□□□□□ -0.46
PICALM-223	ENST00000534412	PHF14	O94880	888 aa		12.17	□□□□□ -0.46
PICALM-223	ENST00000534412	FBXW7	Q969H0	707 aa		12.17	□□□□□ -0.46
PICALM-223	ENST00000534412	SMARCA2	P51531	1590 aa		12.17	□□□□□ -0.46
PICALM-223	ENST00000534412	TYW1B	Q6NUM6	668 aa		12.16	□□□□□ -0.46
PICALM-223	ENST00000534412	ADAM33	Q9BZ11	813 aa		12.16	□□□□□ -0.46
PICALM-223	ENST00000534412	PCDHGA10	Q9Y5H3	936 aa		12.16	□□□□□ -0.46
PICALM-223	ENST00000534412	SPDYE16	A6NNV3	312 aa	Predicted RBP	12.15	□□□□□ -0.46
PICALM-223	ENST00000534412	EPAS1	Q99814	870 aa		12.14	□□□□□ -0.47
PICALM-223	ENST00000534412	NES	P48681	1621 aa		12.13	□□□□□ -0.47
PICALM-223	ENST00000534412	SMARCA4	P51532	1647 aa		12.13	□□□□□ -0.47
PICALM-223	ENST00000534412	PDIA6	Q15084	440 aa		12.12	□□□□□ -0.47
PICALM-223	ENST00000534412	DDX12P	Q92771	950 aa		12.11	□□□□□ -0.47
PICALM-223	ENST00000534412	THOC2	Q8NI27	1593 aa	Known RBP	12.1	□□□□□ -0.47
PICALM-223	ENST00000534412	SLC4A5	Q9BY07	1137 aa		12.1	□□□□□ -0.47
PICALM-223	ENST00000534412	VPS9D1	Q9Y2B5	631 aa		12.1	□□□□□ -0.47
PICALM-223	ENST00000534412	PLCB2	Q00722	1185 aa		12.09	□□□□□ -0.47
PICALM-223	ENST00000534412	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.09	□□□□□ -0.47
PICALM-223	ENST00000534412	HR	O43593	1189 aa		12.08	□□□□□ -0.48
PICALM-223	ENST00000534412	PPP1R3G	B7ZBB8	358 aa		12.07	□□□□□ -0.48
PICALM-223	ENST00000534412	ZBED2	Q9BTP6	218 aa		12.07	□□□□□ -0.48
PICALM-223	ENST00000534412	PEG3	Q9GZU2	1588 aa		12.07	□□□□□ -0.48
PICALM-223	ENST00000534412	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.07	□□□□□ -0.48
PICALM-223	ENST00000534412	NBR1	Q14596	966 aa		12.06	□□□□□ -0.48
PICALM-223	ENST00000534412	RBM33	Q96EV2	1170 aa	Known RBP	12.06	□□□□□ -0.48
PICALM-223	ENST00000534412	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.05	□□□□□ -0.48
PICALM-223	ENST00000534412	LAMC3	Q9Y6N6	1575 aa		12.05	□□□□□ -0.48
PICALM-223	ENST00000534412	C6orf132	Q5T0Z8	1188 aa		12.03	□□□□□ -0.48
PICALM-223	ENST00000534412	GRXCR2	A6NFK2	248 aa		12.02	□□□□□ -0.49
PICALM-223	ENST00000534412	GOLGA8CP	A6NN73	597 aa		12.02	□□□□□ -0.49
PICALM-223	ENST00000534412	MAP3K7	O43318	606 aa		12.02	□□□□□ -0.49
PICALM-223	ENST00000534412	NBPF3	Q9H094	633 aa		12.02	□□□□□ -0.49
PICALM-223	ENST00000534412	MRPL50	Q8N5N7	158 aa	Known RBP	12.01	□□□□□ -0.49
PICALM-223	ENST00000534412	COL9A1	P20849	921 aa		12	□□□□□ -0.49
PICALM-223	ENST00000534412	KCTD12	Q96CX2	325 aa	Known RBP	12	□□□□□ -0.49
PICALM-223	ENST00000534412	HCST	Q9UBK5	93 aa		12	□□□□□ -0.49
PICALM-223	ENST00000534412	EN1	Q05925	392 aa	Predicted RBP	11.99	□□□□□ -0.49
PICALM-223	ENST00000534412	ARHGEF1	Q92888	912 aa	Known RBP	11.99	□□□□□ -0.49
PICALM-223	ENST00000534412	P3H3	Q8IVL6	736 aa		11.98	□□□□□ -0.49
PICALM-223	ENST00000534412	PDS5B	Q9NTI5	1447 aa		11.97	□□□□□ -0.49
PICALM-223	ENST00000534412	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.97	□□□□□ -0.49
PICALM-223	ENST00000534412	RABGEF1	Q9UJ41	708 aa		11.97	□□□□□ -0.49
PICALM-223	ENST00000534412	HAP1	P54257	671 aa	Predicted RBP	11.96	□□□□□ -0.49
PICALM-223	ENST00000534412	PROX2	Q3B8N5	592 aa		11.96	□□□□□ -0.49
PICALM-223	ENST00000534412	KCNV2	Q8TDN2	545 aa		11.95	□□□□□ -0.5
PICALM-223	ENST00000534412	KIF21A	Q7Z4S6	1674 aa		11.94	□□□□□ -0.5
PICALM-223	ENST00000534412	ONECUT3	O60422	494 aa	Predicted RBP	11.93	□□□□□ -0.5
PICALM-223	ENST00000534412	MROH2B	Q7Z745	1585 aa		11.92	□□□□□ -0.5
PICALM-223	ENST00000534412	TSR1	Q2NL82	804 aa	Known RBP	11.92	□□□□□ -0.5
PICALM-223	ENST00000534412	CERK	Q8TCT0	537 aa		11.91	□□□□□ -0.5
PICALM-223	ENST00000534412	WNT2B	Q93097	391 aa		11.91	□□□□□ -0.5
PICALM-223	ENST00000534412	KIAA1468	Q9P260	1216 aa		11.91	□□□□□ -0.5
PICALM-223	ENST00000534412	TRIM6-TRIM34	B2RNG4	842 aa		11.9	□□□□□ -0.5
PICALM-223	ENST00000534412	WDR62	O43379	1518 aa		11.9	□□□□□ -0.5
PICALM-223	ENST00000534412	CADPS	Q9ULU8	1353 aa		11.9	□□□□□ -0.5
PICALM-223	ENST00000534412	MRC2	Q9UBG0	1479 aa		11.89	□□□□□ -0.51
PICALM-223	ENST00000534412	OSBP	P22059	807 aa		11.89	□□□□□ -0.51
PICALM-223	ENST00000534412	PTPN5	P54829	565 aa		11.88	□□□□□ -0.51
PICALM-223	ENST00000534412	LAPTM4B	Q86VI4	370 aa		11.88	□□□□□ -0.51
PICALM-223	ENST00000534412	PACS2	Q86VP3	889 aa		11.88	□□□□□ -0.51
PICALM-223	ENST00000534412	THSD4	Q6ZMP0	1018 aa		11.86	□□□□□ -0.51
PICALM-223	ENST00000534412	ANKK1	Q8NFD2	765 aa		11.86	□□□□□ -0.51
PICALM-223	ENST00000534412	PRIM1	P49642	420 aa	Known RBP	11.84	□□□□□ -0.51
PICALM-223	ENST00000534412	CDCA7L	Q96GN5	454 aa		11.84	□□□□□ -0.51
PICALM-223	ENST00000534412	PRSS12	P56730	875 aa		11.83	□□□□□ -0.52
PICALM-223	ENST00000534412	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.83	□□□□□ -0.52
PICALM-223	ENST00000534412	MLLT3	P42568	568 aa	Predicted RBP	11.82	□□□□□ -0.52
PICALM-223	ENST00000534412	FAM98C	Q17RN3	349 aa	Known RBP	11.81	□□□□□ -0.52
PICALM-223	ENST00000534412	ZFR	Q96KR1	1074 aa	Known RBP	11.81	□□□□□ -0.52
PICALM-223	ENST00000534412	CDHR5	Q9HBB8	845 aa		11.81	□□□□□ -0.52
PICALM-223	ENST00000534412	TSKS	Q9UJT2	592 aa		11.81	□□□□□ -0.52
PICALM-223	ENST00000534412	PLA2G2E	Q9NZK7	142 aa		11.8	□□□□□ -0.52
PICALM-223	ENST00000534412	CEP164	Q9UPV0	1460 aa		11.79	□□□□□ -0.52
PICALM-223	ENST00000534412	NBPF26	B4DH59	902 aa		11.78	□□□□□ -0.52
PICALM-223	ENST00000534412	RBM27	Q9P2N5	1060 aa	Known RBP	11.77	□□□□□ -0.53
PICALM-223	ENST00000534412	SOWAHB	A6NEL2	793 aa		11.76	□□□□□ -0.53
PICALM-223	ENST00000534412	SEMA3E	O15041	775 aa		11.76	□□□□□ -0.53
PICALM-223	ENST00000534412	FANCD2	Q9BXW9	1451 aa		11.76	□□□□□ -0.53
PICALM-223	ENST00000534412	PNMA3	Q9UL41	463 aa		11.75	□□□□□ -0.53
PICALM-223	ENST00000534412	BCAM	P50895	628 aa		11.74	□□□□□ -0.53
PICALM-223	ENST00000534412	LRCH3	Q96II8	777 aa		11.74	□□□□□ -0.53
PICALM-223	ENST00000534412	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.74	□□□□□ -0.53
PICALM-223	ENST00000534412	CFTR	P13569	1480 aa		11.74	□□□□□ -0.53
PICALM-223	ENST00000534412	NUTM2F	A1L443	756 aa		11.73	□□□□□ -0.53
PICALM-223	ENST00000534412	WIZ	O95785	1651 aa		11.73	□□□□□ -0.53
PICALM-223	ENST00000534412	SMYD5	Q6GMV2	418 aa		11.73	□□□□□ -0.53
PICALM-223	ENST00000534412	VSIG10	Q8N0Z9	540 aa		11.73	□□□□□ -0.53
PICALM-223	ENST00000534412	TATDN2	Q93075	761 aa		11.73	□□□□□ -0.53
PICALM-223	ENST00000534412	SMAP	O00193	183 aa		11.72	□□□□□ -0.53
PICALM-223	ENST00000534412	HDGF	P51858	240 aa	Known RBP	11.72	□□□□□ -0.53
PICALM-223	ENST00000534412	PADI6	Q6TGC4	694 aa		11.71	□□□□□ -0.53
PICALM-223	ENST00000534412	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.71	□□□□□ -0.53
PICALM-223	ENST00000534412	FAM198A	Q9UFP1	575 aa		11.71	□□□□□ -0.53

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